SecReT6
I. Summary
SecReT6 ID926 insolico
StrainBacteroides fragilis 638R
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016776
Location2330059..2352459
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number215
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BF638R_19702327276..2327644 [-], 369375358264hypothetical protein 
2BF638R_19712327685..2330057 [-], 2373375358265hypothetical protein 
3BF638R_19722330059..2330952 [-], 894375358266hypothetical protein  TssP
4BF638R_19732330949..2331476 [-], 528375358267hypothetical protein  TssO
5BF638R_19742331489..2331992 [-], 504375358268hypothetical protein  TssO
6BF638R_19752331998..2332954 [-], 957375358269hypothetical protein  TssG
7BF638R_19762332956..2334098 [-], 1143375358270hypothetical protein  TssK
8BF638R_19772334126..2334974 [-], 849375358271putative transmembrane protein  TssN
9BF638R_19782335034..2336050 [-], 1017375358272putative transmembrane protein 
10BF638R_19792336050..2339019 [-], 2970375358273putative transmembrane protein 
11BF638R_19802339030..2339716 [-], 687375358274hypothetical protein  PAAR
12BF638R_19812339735..2341585 [-], 1851375358275hypothetical protein  VgrG
13BF638R_19822341611..2343428 [-], 1818375358276hypothetical protein  TssF
14BF638R_19832343459..2343899 [-], 441375358277putative bacteriophage Gp25 protein  TssE
15BF638R_19842343896..2344354 [-], 459375358278hypothetical protein 
16BF638R_19852344359..2344778 [-], 420375358279hypothetical protein  Hcp
17BF638R_19862344781..2345188 [-], 408375358280hypothetical protein  Hcp
18BF638R_19872345381..2345782 [-], 402375358281putative transmembrane protein 
19BF638R_19882345779..2346774 [-], 996375358282putative transmembrane protein 
20BF638R_19892346787..2347191 [-], 405375358283hypothetical protein  Hcp
21BF638R_19902347197..2347625 [-], 429375358284hypothetical protein  Hcp
22BF638R_19912347641..2350124 [-], 2484375358285putative ATP-dependent protease  ClpV
23BF638R_19922350137..2351516 [-], 1380375358286hypothetical protein  TssC
24BF638R_19932351532..2351981 [-], 450375358287hypothetical protein  TssB
25BF638R_19942352070..2352459 [-], 390375358288hypothetical protein  Hcp
26BF638R_19952352900..2353640 [-], 741375358289hypothetical protein 
27BF638R_19962353988..2355259 [+], 1272375358290putative aminotransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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