SecReT6
I. Summary
SecReT6 ID93 insolico
StrainBurkholderia pseudomallei 1710b
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_007435
Location1490546..1526760
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS1710b_A11841485572..1486813 [-], 124276817752ABC transporter substrate-binding protein 
2BURPS1710b_A11851486849..1488093 [-], 124576817968maltose ABC transporter ATP-binding protein 
3BURPS1710b_A11861488447..1490195 [-], 174976819381hypothetical protein 
4BURPS1710b_A11871490546..1491700 [-], 115576818590LacI family regulatory protein 
5BURPS1710b_A1188 (tnpA)1492009..1492266 [+], 25876818286Tn501 transposition transposase 
6BURPS1710b_A11891493037..1493783 [+], 74776817438hypothetical protein 
7BURPS1710b_A11901494243..1494839 [+], 59776818748invertase/recombinase protein 
8BURPS1710b_A1191 (rhsA2)1494515..1495792 [-], 127876819503hypothetical protein 
9BURPS1710b_A11921495734..1496444 [-], 71176818332hypothetical protein 
10BURPS1710b_A11931496460..1498655 [-], 219676817766Rhs element Vgr protein  TssI
11BURPS1710b_A11941498661..1501327 [-], 266776819843SciG protein  TssH
12BURPS1710b_A11951501306..1502784 [-], 147976817888hypothetical protein  TssG
13BURPS1710b_A11961502781..1504652 [-], 187276819652hypothetical protein  TssF
14BURPS1710b_A11971504657..1505217 [-], 56176818158hypothetical protein  TssE
15BURPS1710b_A11981505236..1505727 [-], 49276819304hypothetical protein  TssD
16BURPS1710b_A11991505787..1507295 [-], 150976818570hypothetical protein  TssC
17BURPS1710b_A12001507288..1507866 [-], 57976818502hypothetical protein  TssB
18BURPS1710b_A12011507929..1509008 [-], 108076817764ImpA-like N-terminal family protein  TssA
19BURPS1710b_A12021509061..1511712 [-], 265276817651serine/threonine protein kinase 
20BURPS1710b_A12031511923..1512828 [-], 90676819515hypothetical protein 
21BURPS1710b_A12041512834..1516463 [-], 363076818019SciS protein  TssM
22BURPS1710b_A12061516445..1518211 [+], 176776818860hypothetical protein 
23BURPS1710b_A12051516466..1517782 [-], 131776817452hypothetical protein  TssL
24BURPS1710b_A12071517798..1519162 [-], 136576818810protein ImpJ  TssK
25BURPS1710b_A12081519198..1519773 [-], 57676817500putative lipoprotein  TssJ
26BURPS1710b_A12091520224..1520757 [+], 53476819333putative lipoprotein 
27BURPS1710b_A12101520812..1522248 [+], 143776819320FHA domain-containing protein  Fha
28BURPS1710b_A12111522291..1524057 [-], 176776818562hypothetical protein 
29BURPS1710b_A12121522345..1524399 [+], 205576818475hypothetical protein 
30BURPS1710b_A12131523993..1524484 [+], 49276817737hypothetical protein 
31BURPS1710b_A12141524664..1525908 [+], 124576818895hypothetical protein 
32BURPS1710b_A12151525981..1526535 [+], 55576817243chorismate lyase 
33BURPS1710b_A12171526471..1527247 [-], 77776817469protamine P1 
34BURPS1710b_A12161526584..1526760 [+], 17776817976hypothetical protein 
35BURPS1710b_A1218 (fabG)1527292..1527996 [-], 70576818672short chain dehydrogenase/reductase family oxidoreductase 
36BURPS1710b_A12191528178..1529092 [+], 91576819263LysR family transcriptional regulator 
37BURPS1710b_A1220 (dsdA)1529246..1530583 [-], 133876818241D-serine dehydratase 
38BURPS1710b_A12211530680..1531621 [+], 94276818083LysR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation