SecReT6
I. Summary
SecReT6 ID94 insolico
StrainBurkholderia pseudomallei 1710b
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_007435
Location1948636..1990080
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS1710b_A15951943828..1945681 [+], 185476819030Hep_Hag family protein 
2BURPS1710b_A15961945748..1947235 [-], 148876818382hypothetical protein 
3BURPS1710b_A15971947497..1948051 [-], 55576817853hypothetical protein 
4BURPS1710b_A1598 (fimA4)1948636..1949181 [+], 54676819245frimbrial protein 
5BURPS1710b_A1599 (staB)1949261..1949983 [+], 72376818373chaperone protein EcpD 
6BURPS1710b_A16001950099..1952840 [+], 274276818889outer membrane usher protein 
7BURPS1710b_A16011952742..1952966 [-], 22576817499hypothetical protein 
8BURPS1710b_A16021952842..1953405 [+], 56476818341major fimbrial subunit protein 
9BURPS1710b_A16031953449..1954126 [+], 67876817325hypothetical protein  TssL
10BURPS1710b_A1604 (ompA2)1954129..1955805 [+], 167776819194OmpA family protein  TagL
11BURPS1710b_A16051956195..1956734 [+], 54076819078hypothetical protein  TssB
12BURPS1710b_A16061956768..1958267 [+], 150076817314hypothetical protein  TssC
13BURPS1710b_A16071958467..1958949 [+], 48376819763hypothetical protein  TssD
14BURPS1710b_A16081959532..1960974 [+], 144376818799hypothetical protein  TssK
15BURPS1710b_A16091960971..1962272 [+], 130276818070hypothetical protein  TssL
16BURPS1710b_A1610 (sciS)1962287..1966195 [+], 390976818330SciS protein  TssM
17BURPS1710b_A16111966226..1966348 [+], 12376817597hypothetical protein 
18BURPS1710b_A16121966385..1966954 [+], 57076818362hypothetical protein 
19BURPS1710b_A16131967052..1969628 [+], 257776817637Rhs element Vgr protein  TssI
20BURPS1710b_A16141969703..1969972 [+], 27076819204Rhs family protein  PAAR
21BURPS1710b_A16151969985..1973437 [+], 345376818340Rhs1 protein 
22BURPS1710b_A16161973330..1974724 [-], 139576819079hypothetical protein 
23BURPS1710b_A16171974527..1974619 [+], 9376817816hypothetical protein 
24BURPS1710b_A16181974721..1975749 [-], 102976819533hypothetical protein 
25BURPS1710b_A16191975804..1976874 [-], 107176818907ImpA-like N-terminal family protein  TssA
26BURPS1710b_A16201976893..1977942 [-], 105076818593hypothetical protein  TssG
27BURPS1710b_A16211977939..1979819 [-], 188176818079hypothetical protein  TssF
28BURPS1710b_A16221979821..1980339 [-], 51976818466hypothetical protein  TssE
29BURPS1710b_A1623 (sciE)1980326..1981180 [-], 85576817875SciE protein  TagJ
30BURPS1710b_A16241981164..1982219 [-], 105676818970hypothetical protein 
31BURPS1710b_A1625 (sciG)1982538..1985294 [+], 275776818455SciG protein  TssH
32BURPS1710b_A16261985557..1985676 [+], 12076818717hypothetical protein 
33BURPS1710b_A1627 (rcsC)1985685..1988651 [-], 296776817983two-component system sensor protein 
34BURPS1710b_A16281989401..1989661 [+], 26176819234hypothetical protein 
35BURPS1710b_A16291989988..1990080 [+], 9376819143hypothetical protein 
36BURPS1710b_A16301990332..1990994 [-], 66376818490DNA-binding response regulator 
37BURPS1710b_A16311991543..1994110 [-], 256876817744putative fimbrial usher protein 
38BURPS1710b_A1632 (fimC1)1994288..1994998 [-], 71176818165putative periplasmic chaperone protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation