SecReT6
I. Summary
SecReT6 ID95 insolico
StrainBurkholderia pseudomallei 1710b
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_007435
Location2053579..2087109
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS1710b_A1679 (pvcA)2050054..2051112 [+], 105976818400pyoverdine chromophore biosynthetic protein PvcA 
2BURPS1710b_A1680 (pvcB)2051109..2052023 [+], 91576818821pyoverdine chromophore biosynthetic protein PvcB 
3BURPS1710b_A1681 (pvcC)2052049..2053533 [+], 148576817901pyoverdin chromophore biosynthetic protein PvcC 
4BURPS1710b_A1682 (asnB)2053579..2055447 [+], 186976817861asparagine synthase 
5BURPS1710b_A16842055392..2057467 [-], 207676817344hypothetical protein 
6BURPS1710b_A16852055463..2057889 [+], 242776819474hypothetical protein 
7BURPS1710b_A16832055476..2056447 [+], 97276819510quinone oxidoreductase 
8BURPS1710b_A16862056502..2057428 [+], 92776819023putative dioxygenase 
9BURPS1710b_A1687 (ptxR)2057672..2059033 [-], 136276819569LysR family transcriptional regulator 
10BURPS1710b_A16882059272..2059475 [+], 20476817475hypothetical protein 
11BURPS1710b_A1689 (sciS)2059856..2063932 [-], 407776818042SciS protein  TssM
12BURPS1710b_A16902063961..2065226 [-], 126676819105hypothetical protein  TssL
13BURPS1710b_A16912065315..2066661 [-], 134776818318hypothetical protein  TssK
14BURPS1710b_A16922066683..2067186 [-], 50476819028putative lipoprotein  TssJ
15BURPS1710b_A16932067293..2067778 [-], 48676819777hypothetical protein  TssD
16BURPS1710b_A16942067895..2069487 [-], 159376817264hypothetical protein  TssC
17BURPS1710b_A16952069429..2073145 [-], 371776817970hypothetical protein  TssB
18BURPS1710b_A1696 (sciG)2070046..2072973 [-], 292876818832SciG protein  TssH
19BURPS1710b_A16972073479..2074225 [+], 74776817991hypothetical protein 
20BURPS1710b_A16982074222..2075187 [+], 96676818111ImpE protein superfamily protein  TagJ
21BURPS1710b_A16992075174..2075755 [+], 58276817523hypothetical protein  TssE
22BURPS1710b_A17002075786..2077675 [+], 189076819516SciC protein  TssF
23BURPS1710b_A17012077675..2078760 [+], 108676819180SciB protein  TssG
24BURPS1710b_A17022078757..2079860 [+], 110476819067ImpA-like N-terminal family protein  TssA
25BURPS1710b_A17032079932..2082259 [+], 232876818495Rhs element Vgr protein  TssI
26BURPS1710b_A17042082180..2084768 [+], 258976819210pentapeptide repeat-containing protein 
27BURPS1710b_A17052084765..2085847 [+], 108376818653pentapeptide repeat-containing protein 
28BURPS1710b_A17062086029..2086688 [+], 66076818273hypothetical protein 
29BURPS1710b_A17072086729..2087109 [+], 38176818805hypothetical protein 
30BURPS1710b_A17092087745..2089970 [+], 222676818439hypothetical protein 
31BURPS1710b_A17082087811..2089727 [-], 191776819385hypothetical protein 
32BURPS1710b_A17102090067..2090960 [-], 89476819531LysR family transcriptional regulator 
33BURPS1710b_A17112090960..2091832 [+], 87376818980quinone reductase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation