SecReT6
I. Summary
SecReT6 ID96 insolico
StrainBurkholderia pseudomallei 1710b
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_007435
Location2517018..2554439
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS1710b_A2064 (ppd)2512351..2513532 [-], 1182768189423-phosphonopyruvate decarboxylase 
2BURPS1710b_A2065 (pepM)2513529..2515217 [-], 168976818535phosphoenolpyruvate phosphomutase 
3BURPS1710b_A20662515208..2515954 [+], 74776818183hypothetical protein 
4BURPS1710b_A2067 (rfbF)2515214..2515981 [-], 76876818403ADP-glucose pyrophosphorylase 
5BURPS1710b_A20682516020..2517006 [-], 98776819736hypothetical protein 
6BURPS1710b_A20692517018..2517869 [-], 852768196932OG-Fe(II) oxygenase 
7BURPS1710b_A20702517788..2518618 [-], 83176819139putative CDP-alcohol phosphatidyltransferase 
8BURPS1710b_A2071 (aarC)2518722..2520350 [+], 162976818232acetyl-CoA hydrolase/transferase 
9BURPS1710b_A20722520447..2520575 [+], 12976817704hypothetical protein 
10BURPS1710b_A20732522107..2523009 [+], 90376819401hypothetical protein  TssA
11BURPS1710b_A20742523043..2523591 [+], 54976818999hypothetical protein  TssB
12BURPS1710b_A20752523594..2525099 [+], 150676817987hypothetical protein  TssC
13BURPS1710b_A20762525243..2525770 [+], 52876817268hypothetical protein  TssD
14BURPS1710b_A20772525850..2526281 [+], 43276819104hypothetical protein  TssE
15BURPS1710b_A20782526295..2528157 [+], 186376818387hypothetical protein  TssF
16BURPS1710b_A20792528154..2529143 [+], 99076818050hypothetical protein  TssG
17BURPS1710b_A2080 (htpM)2529146..2532016 [+], 287176817313ATP-dependent Clp protease ATP-binding subunit  TssH
18BURPS1710b_A2081 (vgrG5)2532007..2534298 [+], 229276819321Rhs element Vgr protein  TssI
19BURPS1710b_A2082 (vgrG5)2534464..2536752 [+], 228976819730Rhs element Vgr protein  TssI
20BURPS1710b_A20832536756..2538972 [+], 221776819135hypothetical protein 
21BURPS1710b_A20842538972..2540042 [+], 107176818245pentapeptide repeat-containing protein 
22BURPS1710b_A20852540045..2540761 [+], 71776819713hypothetical protein 
23BURPS1710b_A20862540804..2541193 [+], 39076819119hypothetical protein 
24BURPS1710b_A20872541253..2541792 [+], 54076818282putative lipoprotein  TssJ
25BURPS1710b_A20882541789..2543150 [+], 136276817649hypothetical protein  TssK
26BURPS1710b_A20892543176..2544891 [+], 171676819156hypothetical protein  TssL
27BURPS1710b_A2090 (icmF3)2545077..2548391 [+], 331576818309hypothetical protein  TssM
28BURPS1710b_A20912548450..2548809 [+], 36076818435hypothetical protein 
29BURPS1710b_A20922548964..2549257 [+], 29476819309hypothetical protein 
30BURPS1710b_A20932549482..2549853 [+], 37276818613hypothetical protein 
31BURPS1710b_A2094 (rhlA-2)2550404..2551303 [+], 90076818212rhamnosyltransferase 1 subunit A 
32BURPS1710b_A2095 (rhlB-1)2551537..2552856 [+], 132076818206rhamnosyltransferase I subunit B 
33BURPS1710b_A2096 (bcrA)2552853..2554439 [+], 158776817483multidrug resistance protein 
34BURPS1710b_A2097 (rhlC)2554680..2555675 [+], 99676818923rhamnosyltransferase II 
35BURPS1710b_A20982555980..2557563 [+], 158476817856RND efflux system outer membrane lipoprotein 
36BURPS1710b_A2100 (emrA)2557828..2559297 [+], 147076818383multidrug resistance protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BURPS1710b_A20762525243..2525770 [+], 52876817268hypothetical protein YPK_3563

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation