SecReT6
I. Summary
SecReT6 ID99 insolico
StrainRhodobacter sphaeroides 2.4.1
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_007494
Location535219..572137
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RSP_3461530296..531222 [+], 92777465463N-carbamyl-D-amino acid amidohydrolase 
2RSP_3462531235..532692 [+], 145877465464dihydropyrimidinase 
3RSP_3463532689..533330 [+], 64277465465hydantoin racemase 
4RSP_3464533327..534256 [+], 93077465466LysR family transcriptional regulator 
5RSP_3465534253..534861 [+], 60977465467hypothetical protein 
6RSP_3466535219..536508 [+], 129077465468hypothetical protein 
7RSP_3467536510..537532 [+], 102377465469hypothetical protein 
8RSP_3468537525..538616 [+], 1092774654703-oxoacyl-ACP synthase 
9RSP_3469538613..539614 [+], 100277465471hypothetical protein 
10RSP_3470539611..540390 [+], 78077465472hypothetical protein 
11RSP_3471540413..541099 [+], 68777465473hypothetical protein 
12RSP_3472541096..541494 [-], 39977465474hypothetical protein 
13RSP_3474541487..544156 [-], 267077465475hypothetical protein  TssH
14RSP_3475544270..546276 [+], 200777465476Serine/threonine protein kinase 
15RSP_3476546374..547447 [+], 107477465477hypothetical protein  TssA
16RSP_3477547466..547996 [+], 53177465478hypothetical protein  TssB
17RSP_3478547993..549510 [+], 151877465479hypothetical protein  TssC
18RSP_3479549562..550053 [+], 49277465480hypothetical protein  TssD
19RSP_3480550086..550793 [+], 70877465481hypothetical protein  TssE
20RSP_3481550793..552658 [+], 186677465482hypothetical protein  TssF
21RSP_3482552622..553620 [+], 99977465483hypothetical protein  TssG
22RSP_3483553614..554843 [+], 123077465484hypothetical protein  Fha
23RSP_3484554836..555288 [+], 45377465485hypothetical protein  TssJ
24RSP_3485555297..556625 [+], 132977465486hypothetical protein  TssK
25RSP_3486556690..558051 [+], 136277465487OmpA family outer membrane protein  TssL
26RSP_3487558051..561572 [+], 352277465488hypothetical protein  TssM
27RSP_3488561562..562053 [+], 49277465489hypothetical protein 
28RSP_3489562063..564366 [-], 230477465490hypothetical protein  TssI
29RSP_3490564383..566791 [-], 240977465491hypothetical protein  TssM
30RSP_3491566791..567639 [-], 84977465492hypothetical protein 
31RSP_3492567643..568389 [-], 74777465493protein phosphatase 2C 
32RSP_3494568532..569296 [+], 76577465494OmpA/MotB domain-containing protein  TagL
33RSP_3493569293..570219 [-], 92777465495hypothetical protein 
34RSP_3495570216..570626 [-], 41177465496hypothetical protein 
35RSP_3496570626..572137 [-], 151277465497Zinc carboxypeptidase A metalloprotease (M14) 
36RSP_3497572258..575173 [+], 291677465498caspase-1, p20 
37RSP_6182575170..575628 [+], 45977465499hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation