SecReT6
SecReT6 contains data from 824 references related to type VI secretion systems (T6SSs). Last Update: March 21st, 2015

Categories (Literatures contain following contents are categorized)
reviews experimental studies bioinformatics genome sequencing T6SS component T6SS effectors
effector translocation structural study regulation other
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Number of references found for the 'sequencing' category : 86

References
(1) Desilets M et al (2015) Genome-based Definition of an Inflammatory Bowel Disease-associated Adherent-Invasive Escherichia coli Pathovar. Inflamm Bowel Dis. . [PMID:26444104]
(2) Quibod IL et al (2015) Rice-Infecting Pseudomonas Genomes Are Highly Accessorized and Harbor Multiple Putative Virulence Mechanisms to Cause Sheath Brown Rot. PLoS One. 10(9):e0139256. [PMID:26422147]
(3) Liu C et al (2015) Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033. BMC Genomics. 16(1):717. [PMID:26391348]
(4) Borges V et al (2015) Helicobacter pullorum isolated from fresh chicken meat - antibiotic resistance and genomic traits of an emerging foodborne pathogen. Appl Environ Microbiol. pii: AEM.02394-15. [PMID:26386065]
(5) Gao R et al (2015) Genome-wide RNA sequencing analysis of quorum sensing-controlled regulons in the plant-associated Burkholderia glumae strain PG1. Appl Environ Microbiol. pii: AEM.01043-15. [PMID:26362987]
(6) Martinez-Garcia PM et al (2015) Bioinformatics Analysis of the Complete Genome Sequence of the Mango Tree Pathogen Pseudomonas syringae pv. syringae UMAF0158 Reveals Traits Relevant to Virulence and Epiphytic Lifestyle. PLoS One. 10(8):e0136101. [PMID:26313942]
(7) Trantas EA et al (2015) Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea. Front Microbiol. 6:811. [PMID:26300874]
(8) Sapountzis P et al (2015) The Enterobacterium Trabulsiella odontotermitis Presents Novel Adaptations Related to Its Association with Fungus-Growing Termites. Appl Environ Microbiol. 81(19):6577-88. [PMID:26162887]
(9) Pang M et al (2015) Novel insights into the pathogenicity of epidemic Aeromonas hydrophila ST251 clones from comparative genomics. Sci Rep. 5:9833. [PMID:26014286]
(10) Suzuki M et al (2015) Genome Sequence of a Carbapenem-Resistant Strain of Ralstonia mannitolilytica. Genome Announc. 3(3). [PMID:25953190]
(11) Behar A et al (2015) Whole genome analysis to detect potential vaccine-induced changes on Shigella sonnei genome. Vaccine. pii: S0264-410X(15)00550-2. [PMID:25936664]
(12) Kang H et al (2015) Characterization and Genomic Analysis of Quinolone-Resistant Delftia sp. 670 Isolated from a Patient Who Died from Severe Pneumonia. Curr Microbiol. . [PMID:25935202]
(13) Osterman J et al (2015) Genomic features separating ten strains of Neorhizobium galegae with different symbiotic phenotypes. BMC Genomics. 16:348. [PMID:25933608]
(14) Richards VP et al (2015) Genome Based Phylogeny and Comparative Genomic Analysis of Intra-Mammary Pathogenic Escherichia coli. PLoS One. 10(3):e0119799. [PMID:25807497]
(15) Torres D et al (2015) Genome Sequence of Bradyrhizobium japonicum E109, One of the Most Agronomically Used Nitrogen-Fixing Rhizobacteria in Argentina. Genome Announc. 3(1). [PMID:25700406]
(16) Martinez-Garcia PM et al (2015) Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae. Stand Genomic Sci. 10:10. [PMID:25685259]
(17) Chieng S et al (2015) Transcriptome analysis of Burkholderia pseudomallei T6SS identifies Hcp1 as a potential serodiagnostic marker. Microb Pathog. 79:47-56. [PMID:25616255]
(18) Lin LC et al (2015) Draft Genome Sequence of Vibrio owensii GRA50-12, Isolated from Green Algae in the Intertidal Zone of Eastern Taiwan. Genome Announc. 3(1). [PMID:25593265]
(19) Siddiqui F et al (2015) Molecular detection identified a Type Six Secretion System in Campylobacter jejuni from various sources but not from human cases. J Appl Microbiol. doi: 10.1111/jam.12748. [PMID:25580664]
(20) Nandi T et al (2015) Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles. Genome Res. 25(1):129-41. [PMID:25236617]
(21) Liu F et al (2014) Comparative genomic analysis of Acinetobacter baumannii clinical isolates reveals extensive genomic variation and diverse antibiotic resistance determinants. BMC Genomics. 15(1):1163. [PMID:25534766]
(22) Ugarte-Ruiz M et al (2014) Prevalence of Type VI Secretion System in Spanish Campylobacter jejuni Isolates. Zoonoses Public Health. doi: 10.1111/zph.12176. [PMID:25496466]
(23) Li H et al (2014) Evolution of carbapenem-resistant Acinetobacter baumannii through whole genome sequencing and comparative genomic analysis. Antimicrob Agents Chemother. 59(2):1168-76. [PMID:25487793]
(24) Kenzaka T et al (2014) Draft Genome Sequences of Amoeba-Resistant Aeromonas spp. Isolated from Aquatic Environments. Genome Announc. 2(5). [PMID:25359918]
(25) Shen Z et al (2014) Draft genome sequences of six enterohepatic helicobacter species isolated from humans and one from rhesus macaques. Genome Announc. 2(5). [PMID:25212613]
(26) Medrano EG et al (2014) Complete Genome Sequence of a Klebsiella pneumoniae Strain Isolated from a Known Cotton Insect Boll Vector. Genome Announc. 2(4). [PMID:25146146]
(27) Sasaki H et al (2014) Draft Genome Sequence of the Rodent Opportunistic Pathogen Pasteurella pneumotropica ATCC 35149T. Genome Announc. 2(4). [PMID:25103762]
(28) Weller-Stuart T et al (2014) Draft Genome Sequences of the Onion Center Rot Pathogen Pantoea ananatis PA4 and Maize Brown Stalk Rot Pathogen P. ananatis BD442. Genome Announc. 2(4). [PMID:25103759]
(29) Darby A et al (2014) Cytotoxic and Pathogenic Properties of Klebsiella oxytoca Isolated from Laboratory Animals. PLoS One. 9(7):e100542. [PMID:25057966]
(30) Kwong WK et al (2014) Genomics and host specialization of honey bee and bumble bee gut symbionts. Proc Natl Acad Sci U S A. 111(31):11509-14. [PMID:25053814]
(31) Mohd Suhaimi NS et al (2014) Genome Sequence of Kosakonia radicincitans UMEnt01/12, a Bacterium Associated with Bacterial Wilt Diseased Banana Plant. FEMS Microbiol Lett. 358(1):11-3. [PMID:25047976]
(32) Zuleta LF et al (2014) The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes. BMC Genomics. 15(1):535. [PMID:24972629]
(33) Rydzewski K et al (2014) Genome sequence and phenotypic analysis of a first German Francisella sp. isolate (W12-1067) not belonging to the species Francisella tularensis. BMC Microbiol. 14(1):169. [PMID:24961323]
(34) Wang S et al (2014) Whole-genome sequencing of Mesorhizobium huakuii 7653R provides molecular insights into host specificity and symbiosis island dynamics. BMC Genomics. 15(1):440. [PMID:24906389]
(35) Adam Z et al (2014) Draft Genome Sequence of Pantoea ananatis Strain LMG 2665T, a Bacterial Pathogen of Pineapple Fruitlets. Genome Announc. 2(3). [PMID:24855311]
(36) Okada K et al (2014) Complete Genome Sequence of Bordetella bronchiseptica S798, an Isolate from a Pig with Atrophic Rhinitis. Genome Announc. 2(3). [PMID:24831150]
(37) Jousset A et al (2014) Full-Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas protegens CHA0. Genome Announc. 2(2). [PMID:24762936]
(38) Pedron J et al (2014) Genomic and metabolic comparison with Dickeya dadantii 3937 reveals the emerging Dickeya solani potato pathogen to display distinctive metabolic activities and T5SS/T6SS-related toxin repertoire. BMC Genomics. 15(1):283. [PMID:24735398]
(39) Dudnik A et al (2014) Genome and Transcriptome Sequences of Pseudomonas syringae pv. syringae B301D-R. Genome Announc. 2(2). [PMID:24723725]
(40) Rudder S et al (2014) Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes. BMC Genomics. 15(1):268. [PMID:24708309]
(41) Lee JH et al (2014) Draft genome sequence of Xanthomonas axonopodis pv. glycines 8ra possessing transcription activator-like effectors used for genetic engineering. J Biotechnol. 179C:15-16. [PMID:24657734]
(42) Gopinath G et al (2014) Draft Genome Sequences of Nine Salmonella enterica Serovar Bovismorbificans Isolates from Various Sources. Genome Announc. 2(2). [PMID:24604660]
(43) Gopinath G et al (2014) Whole-Genome Sequences of Six Salmonella enterica Serovar Bovismorbificans Isolates Associated with a 2011 Multistate Hummus-Borne Outbreak. Genome Announc. 6;2(2). [PMID:24604659]
(44) Adamek M et al (2014) Virulence genes in clinical and environmental Stenotrophomas maltophilia isolates: A genome sequencing and gene expression approach. Microb Pathog. 67-68:20-30. [PMID:24530922]
(45) Bishop AH et al (2014) Identification of Genes Required for Soil Survival in Burkholderia thailandensis by Transposon-Directed Insertion Site Sequencing. Curr Microbiol. 68(6):693-701. [PMID:24488501]
(46) Ushijima B et al (2014) Vibrio coralliilyticus strain OCN008 is an etiological agent of acute Montipora white syndrome. Appl Environ Microbiol. 80(7):2102-9. [PMID:24463971]
(47) Ohtsubo Y et al (2014) Complete Genome Sequence of Pseudomonas aeruginosa MTB-1, Isolated from a Microbial Community Enriched by the Technical Formulation of Hexachlorocyclohexane. Genome Announc. 2(1). [PMID:24459257]
(48) Wright MS et al (2014) New insights into dissemination and variation of the health care-associated pathogen Acinetobacter baumannii from genomic analysis. MBio. 5(1):e00963-13. [PMID:24449752]
(49) Lu X et al (2014) Identification of Genetic bases of Vibrio fluvialis species-specific biochemical pathways and potential virulence factors by comparative genomic analysis. Appl Environ Microbiol. 80(6):2029-37. [PMID:24441165]
(50) Gardiner DM et al (2014) Genomic Analysis of Xanthomonas translucens Pathogenic on Wheat and Barley Reveals Cross-Kingdom Gene Transfer Events and Diverse Protein Delivery Systems. PLoS One. 9(1):e84995. [PMID:24416331]
(51) Fu Y et al (2013) Tn-Seq Analysis of Vibrio cholerae Intestinal Colonization Reveals a Role for T6SS-Mediated Antibacterial Activity in the Host. Cell Host Microbe. 14(6):652-63. [PMID:24331463]
(52) Vandroemme J et al (2013) Draft genome sequence of Xanthomonas fragariae reveals reductive evolution and distinct virulence-related gene content. BMC Genomics. 14(1):829. [PMID:24274055]
(53) Carruthers MD et al (2013) Draft Genome Sequence of the Clinical Isolate Acinetobacter nosocomialis Strain M2. Genome Announc. 1(6). [PMID:24201195]
(54) Darrasse A et al (2013) Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. BMC Genomics. 14(1):761. [PMID:24195767]
(55) Gao X et al (2013) Genomic study of polyhydroxyalkanoates producing Aeromonas hydrophila 4AK4. Appl Microbiol Biotechnol. 97(20):9099-109. [PMID:24000047]
(56) Jakobsen TH et al (2013) Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with Important Pathogenic Phenotypes. PLoS One. 8(7):e68484. [PMID:23894309]
(57) Zhang JX et al (2013) Genome Sequence of the Banana Pathogen Dickeya zeae Strain MS1, Which Causes Bacterial Soft Rot. Genome Announc. 1(3). [PMID:23766402]
(58) Marchi M et al (2013) Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots. Environ Microbiol Rep. 5(3):393-403. [PMID:23754720]
(59) Smits TH et al (2013) Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics. Syst Appl Microbiol. 36(7):449-56. [PMID:23726521]
(60) Hayward MR et al (2013) Comparative genomics of Salmonella enterica serovars Derby and Mbandaka, two prevalent serovars associated with different livestock species in the UK. BMC Genomics. 14:365. [PMID:23725633]
(61) Sarris PF et al (2013) Comparative Genomics of Multiple Strains of Pseudomonas cannabina pv. alisalensis, a Potential Model Pathogen of Both Monocots and Dicots. PLoS One. 8(3):e59366. [PMID:23555661]
(62) Thapa SP et al (2013) Comparative genomics of Japanese Erwinia pyrifoliae strain Ejp617 with closely related erwinias. Genome. 56(2):83-90. [PMID:23517317]
(63) Guardiola-Avila I et al (2013) Draft Genome Sequence of Vibrio mimicus Strain CAIM 602T. Genome Announc. 1(2):e0008413. [PMID:23516211]
(64) Desai PT et al (2013) Evolutionary Genomics of Salmonella enterica Subspecies. MBio. 4(2):e00198-13. [PMID:23462113]
(65) Grigoryeva TV et al (2013) Draft Genome of the Nitrogen-Fixing Bacterium Pseudomonas stutzeri Strain KOS6 Isolated from Industrial Hydrocarbon Sludge. Genome Announc. 1(1). [PMID:23405317]
(66) Hornung C et al (2013) The Janthinobacterium sp. HH01 genome encodes a homologue of the V. cholerae CqsA and L. pneumophila LqsA autoinducer synthases. PLoS One. 8(2):e55045. [PMID:23405110]
(67) Dong TG et al (2013) Identification of T6SS-dependent effector and immunity proteins by Tn-seq in Vibrio cholerae. Proc Natl Acad Sci U S A . 110(7):2623-8. [PMID:23362380]
(68) Redondo-Nieto M et al (2013) Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction. BMC Genomics. 14:54. [PMID:23350846]
(69) Joseph S et al (2012) Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One. 7(11):e49455. [PMID:23166675]
(70) Nykyri J et al (2012) Revised Phylogeny and Novel Horizontally Acquired Virulence Determinants of the Model Soft Rot Phytopathogen Pectobacterium wasabiae SCC3193. PLoS Pathog. 8(11):e1003013. [PMID:23133391]
(71) Goto T et al (2012) Complete genome sequence of Helicobacter cinaedi strain PAGU611, isolated in a case of human bacteremia. J Bacteriol. 194(14):3744-5. [PMID:22740670]
(72) Amaral GR et al (2012) Genome sequence of the bacterioplanktonic, mixotrophic Vibrio campbellii strain PEL22A, isolated in the Abrolhos Bank. J Bacteriol. 194(10):2759-60. [PMID:22535939]
(73) Dias GM et al (2012) Genome sequence of the marine bacterium Vibrio campbellii DS40M4, isolated from open ocean water. J Bacteriol. 194(4):904. [PMID:22275102]
(74) Thompson CC et al (2011) Genome sequence of the human pathogen Vibrio cholerae Amazonia. J Bacteriol. 193(20):5877-8. [PMID:21952545]
(75) Mandlik A et al (2011) RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression. Cell Host Microbe. 10(2):165-74. [PMID:21843873]
(76) Pedrosa FO et al (2011) Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grasses. PLoS Genet. 7(5):e1002064. [PMID:21589895]
(77) Penz T et al (2010) The genome of the amoeba symbiont "Candidatus Amoebophilus asiaticus" encodes an afp-like prophage possibly used for protein secretion. Virulence. 1(6):541-5. [PMID:21178499]
(78) Miquel S et al (2010) Complete Genome Sequence of Crohn's Disease-Associated Adherent-Invasive E. coli Strain LF82. PLoS One. 5(9). [PMID:20862302]
(79) Kucerova E1, Clifton SW, Xia XQ, Long F et al (2010) Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One. 5(3):e9556. [PMID:20221447]
(80) Roy PH et al (2010) Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7. PLoS One. 5(1):e8842. [PMID:20107499]
(81) Chaudhuri RR et al (2010) Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. PLoS One. 5(1):e8801. [PMID:20098708]
(82) Wang Q et al (2009) Genome sequence of the versatile fish pathogen Edwardsiella tarda provides insights into its adaptation to broad host ranges and intracellular niches. PLoS One. 4(10):e7646. [PMID:19865481]
(83) Yang JC et al (2009) The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). PLoS One. 4(7):e6085. [PMID:19568419]
(84) Champion MD et al (2009) Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies. PLoS Pathog. 5(5):e1000459. [PMID:19478886]
(85) Smith MG et al (2007) New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis. Genes Dev. 21(5):601-14. [PMID:17344419]
(86) Perna NT et al (2001) Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature. 409(6819):529-33. [PMID:11206551]