Genomic island (or plasmid) carrying dnd gene cluster in Eubacteria and Archaea


Figure 1. A 92.8kb genomic island (GI) named SLG from Streptomyces lividans 1326 encoding DNA degradation (Dnd) system.

No.Organism [NCBI accession. no]Size of GI (kb)G+C content [genome G+C content]
1Acidobacterium capsulatum ATCC 51196 [NC_012483] (isolated from acidic mine drainage)33.4355.6% [60.5%]
2Bacillus cereus E33L [NC_006274] (fruit poisoning)33.7232.6% [35.4%]
3Burkholderia ambifaria MC40-6 [NC_010551] (isolated from cystic fibrosis patients but with potential use in biocontrol)12.4556.4% [66%]
4Candidatus Methanoregula boonei 6A8 [NC_009712] (Archaea, acidophilic)11.2740.2% [54.5%]
5Candidatus Pelagibacter ubique HTCC1002 [NZ_AAPV01000002] (some of the smallest self-replicating cells known)38.0328% [29.8%]
6Citrobacter koseri ATCC BAA-895 [NC_009792] (resides in soil, water and food products)46.6340% [53.8%]
7Clostridium botulinum E3 str. Alaska E43 [NC_010723] (pathogen)20.725.9% [27.4%]
8Clostridium perfringens NCTC 8239 [NZ_ABDY01000007] (pathogen)18.3225.5% [28.7%]
9Desulfatibacillum alkenivorans AK-01 [NZ_ABII01000002] (isolated from sediment from the Arthur Kill, NJ/NY waterway)28.842.3% [54.5%]
10Enterobacter sp. 638 [NC_009436] (endophyte)16.8944.3% [53.0%]
11Escherichia coli 55989 [NC_011748] (pathogen)59.9743.6% [50.7%]
12Escherichia coli B7A [NZ_AAJT01000066] (pathogen)17.9 (tRNA-proximal partial region)49.9% [50.8%]
13Escherichia coli SE11 [NC_011415] (wild-type Commensal Strain Isolated from a Healthy Adult)16.6645.3% [50.8%]
14Exiguobacterium sp. AT1b [NZ_ABPF01000011] (moderate thermophile)21.5335.58% [48.4%]
15gamma proteobacterium NOR5-3 [DS999407] (isolated from the top oxic layer of a muddy sediment core)89.8551.1% [56.3%]
16Geobacter uraniireducens Rf4 [NC_009483] (isolated from uranium bioremediation site)17.9151.4% [54.2%]
17Hahella chejuensis KCTC 2396 [NC_007645] (halophilic)47.8147% [53.9%]
18Mesorhizobium sp. BNC1 plasmid3 [NC_008244] (plasmid, EDTA degradation)47.56 (whole plasmid)61.5% [61.5%]
19Mycobacterium abscessus ATCC 19977 [NC_010397] (pathogen)19.6459% [64.1%]
20Oceanobacter sp. RED65 [ NZ_AAQH01000003] (marine microorganism)21.9740.7% [44.0%]
21Pseudoalteromonas haloplanktis TAC125 [NC_007482] (plasmid-derived Chromosome II,Halophilic and low temperature)17.6736.1% [39.4%]
22Pseudomonas fluorescens PfO-1 [NC_007492] (bioremediant)13.9251.4% [60.5%]
23Roseobacter denitrificans OCh 114 [NC_008209] (anaerobic anoxygenic photosynthesis)27.6152% [59.0%]
24Salmonella enterica serovar Saintpaul SARA23 [NZ_ABAM01000005] (pathogen)19.7645.9% [52.4%]
25Shewanella pealeana ATCC 700345 [NC_009901] (reduce elemental sulfur, psychrotolerant)22.4739.3% [44.7%]
26Streptomyces avermitilis MA-4680 [NC_003155] (antibiotic producer)29.0462.8% [70.7%]
27Streptomyces lividans 1326 [EF210454] (antibiotic producer, host strain for gene cloning in Streptomyces)92.7767.8% [70%]
28Tolumonas auensis DSM 9187 [NC_012691] (produce tolulene)15.1335.4% [49.0%]
29Vibrio cholerae MZO-2 [NZ_AAWF01000002] (pathogen)14.9945% [47.6%]
30Vibrio cholerae MZO-3 [NZ_AAUU01000003 ] (pathogen)15.8240.7% [47%]
31Vibrio fischeri MJ11 [NC_011186] (Chromosome II, marine microbe, symbiont in fish and squids)17.8539.5% [37.2%]