ICEberg
I. Information of ICE
ICEberg ID159
Name TnGBS2 (genomic island X) This ICE is derived from experimental literature
ICEO ID ICEO_0000164
FamilyUnclassified
OrganismStreptococcus agalactiae NEM316
Size (bp)33445
GC content [Genome] (%)38.11[35.63]
Insertion siteIntergenic regions upstream of σ-A promoters
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_004368 (complete ICE sequence in this genome)
Replicon chromosome (2211485 bp, BioProject:334) [NC_004368]
Genome coordinates1163887..1197331 
Putative oriT region -
Putative relaxase coordinates: 1166876..1168507; Locus tag: gbs1121;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of TnGBS2 (genomic island X) is not available.



The graph information of TnGBS2 (genomic island X) components from NC_004368
Complete gene list of TnGBS2 (genomic island X) from NC_004368
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1gbs11141159215..1160450 [+], 1236hypothetical protein
2gbs11151160549..1161337 [+], 789formate/nitrate transporter
3gbs11161161436..1162710 [-], 1275xanthine permease
4gbs11171162710..1163291 [-], 582xanthine phosphoribosyltransferase
5gbs11181163887..1165182 [-], 1296hypothetical proteinIntegrase 
6gbs11191165322..1165621 [-], 300hypothetical protein
7gbs11201165632..1166879 [-], 1248hypothetical protein
8gbs11211166876..1168507 [-], 1632hypothetical proteinRelaxase, MOBP Family
9gbs11221168479..1168853 [-], 375hypothetical protein
10gbs11231168856..1169419 [-], 564hypothetical protein
11gbs11241169422..1169718 [-], 297hypothetical protein
12gbs11251169762..1170061 [-], 300hypothetical protein
13gbs11261170113..1173349 [-], 3237hypothetical protein
14gbs11271173351..1173716 [-], 366hypothetical protein
15gbs11281173758..1175803 [-], 2046hypothetical proteinT4CP 
16gbs11291175803..1176294 [-], 492hypothetical protein
17gbs11301176316..1177098 [-], 783hypothetical proteinOrf13_p, T4SS component 
18gbs11311177098..1177370 [-], 273hypothetical protein
19gbs11321177390..1177995 [-], 606hypothetical proteinPrgL, T4SS component 
20gbs11331178016..1180706 [-], 2691hypothetical proteinPrgK, T4SS component 
21gbs11341180739..1181269 [+], 531hypothetical protein
22gbs11351181463..1183853 [-], 2391hypothetical proteinPrgJ, T4SS component 
23gbs11361183795..1184154 [-], 360hypothetical protein
24gbs11371184216..1184674 [-], 459hypothetical protein
25gbs11381184735..1184962 [-], 228hypothetical protein
26gbs11391185206..1185703 [-], 498hypothetical protein
27gbs11401185717..1186469 [-], 753hypothetical proteinPrgH, T4SS component 
28gbs11411186518..1187003 [-], 486hypothetical protein
29gbs11421187109..1187336 [-], 228hypothetical proteinPrgF, T4SS component 
30gbs11431187611..1190409 [-], 2799hypothetical proteinPrgB, T4SS component 
31gbs11441190476..1191186 [-], 711hypothetical proteinPrgC, T4SS component 
32gbs11451191201..1193432 [-], 2232hypothetical proteinPrgA, T4SS component 
33gbs11461193449..1193748 [-], 300hypothetical protein
34gbs11471194131..1194328 [-], 198hypothetical protein
35gbs11481194325..1194510 [-], 186hypothetical protein
36gbs11491194512..1195537 [-], 1026hypothetical protein
37gbs11501195539..1195703 [-], 165hypothetical protein
38gbs11511195810..1196253 [-], 444hypothetical protein
39gbs11521196519..1196776 [-], 258hypothetical protein
40gbs11531196960..1197331 [-], 372hypothetical protein
41gbs11541197445..1198428 [-], 984guanosine 5'-monophosphate oxidoreductase
42gbs11551198631..1199971 [-], 1341hypothetical protein
43gbs11561200242..1200934 [+], 693hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins36Fasta
(1) Brochet M; Da Cunha V; Couve E; Rusniok C; Trieu-Cuot P; Glaser P (2009). Atypical association of DDE transposition with conjugation specifies a new family of mobile elements. Mol Microbiol. 71(4):948-59. [PudMed:19183283] experimental
(2) Glaser P; Rusniok C; Buchrieser C; Chevalier F; Frangeul L; Msadek T; Zouine M; Couve E; Lalioui L; Poyart C; Trieu-Cuot P; Kunst F (2002). Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease. Mol Microbiol. 45(6):1499-513. [PudMed:12354221]
 
experimental experimental literature