ICEberg
I. Information of ICE
ICEberg ID160
Name TnGBS1 This ICE is derived from experimental literature
ICEO ID ICEO_0000124
FamilyTnGBS1
OrganismStreptococcus agalactiae NEM316
Size (bp)47068
GC content [Genome] (%)37.66[35.63]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_004368 (complete ICE sequence in this genome)
Replicon chromosome (2211485 bp, BioProject:334) [NC_004368]
Genome coordinates385757..432824 
Putative oriT region -
Putative relaxase coordinates: 397563..399929; Locus tag: gbs0384;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of TnGBS1 is not available.



The graph information of TnGBS1 components from NC_004368
Complete gene list of TnGBS1 from NC_004368
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1gbs0355380779..382086 [+], 1308hypothetical protein
2gbs0356382150..382446 [-], 297hypothetical protein
3gbs0357382443..382862 [-], 420HIT family protein
4gbs0358383198..383701 [+], 504hypothetical protein
5gbs0359384010..384735 [+], 726ABC transporter ATP-binding protein
6gbs0360384737..385777 [+], 1041hypothetical protein
7gbs0361385870..386058 [+], 189hypothetical protein
8gbs0362386095..386589 [+], 495hypothetical protein
9gbs0363386600..386929 [+], 330hypothetical protein
10gbs0364386848..387027 [+], 180hypothetical protein
11gbs0365387033..387152 [+], 120hypothetical protein
12gbs0366387145..387372 [+], 228hypothetical protein
13gbs0367387385..388878 [+], 1494hypothetical protein
14gbs0369389134..389337 [+], 204hypothetical protein
15gbs0370389349..389777 [+], 429hypothetical protein
16gbs0371389777..390223 [+], 447hypothetical protein
17gbs0372390413..390862 [+], 450hypothetical protein
18gbs0373390855..391265 [+], 411hypothetical protein
19gbs0374391443..391586 [+], 144hypothetical protein
20gbs0375391601..391849 [+], 249hypothetical protein
21gbs0376391842..392798 [-], 957hypothetical protein
22gbs0377392877..393881 [+], 1005hypothetical protein
23gbs0378393937..394785 [+], 849hypothetical protein
24gbs0379394908..395183 [+], 276hypothetical protein
25gbs0380395577..395894 [+], 318hypothetical protein
26gbs0381395887..396234 [+], 348hypothetical protein
27gbs0382396234..397034 [+], 801hypothetical protein
28gbs0383397051..397509 [+], 459hypothetical protein
29gbs0384397563..399929 [+], 2367hypothetical proteinRelaxase, MOBL Family
30gbs0385400055..400312 [+], 258hypothetical protein
31gbs0386400331..405061 [+], 4731hypothetical protein
32gbs0387405244..406992 [+], 1749hypothetical protein
33gbs0388406994..408826 [+], 1833hypothetical protein
34gbs0389408918..409265 [+], 348hypothetical protein
35gbs0390409276..410358 [+], 1083hypothetical protein
36gbs0391410373..412634 [+], 2262hypothetical proteinPrgA, T4SS component 
37gbs0392412711..413433 [+], 723hypothetical proteinPrgC, T4SS component 
38gbs0393413485..416286 [+], 2802hypothetical proteinPrgB, T4SS component 
39gbs0394416458..416889 [+], 432hypothetical protein
40gbs0395417117..417374 [+], 258hypothetical protein
41gbs0396417367..420516 [+], 3150hypothetical proteinT4CP 
42gbs0397420616..421098 [+], 483hypothetical protein
43gbs0398421218..423425 [+], 2208hypothetical protein
44gbs0399423482..423715 [+], 234hypothetical protein
45gbs0400423946..424251 [+], 306hypothetical protein
46gbs0401424251..424898 [+], 648hypothetical protein
47gbs0402424908..426857 [+], 1950hypothetical protein
48gbs0403426877..427134 [+], 258hypothetical protein
49gbs0404427148..428485 [+], 1338hypothetical protein
50gbs0405428499..429083 [+], 585hypothetical protein
51gbs0406429222..430040 [+], 819hypothetical protein
52gbs0407430037..430315 [+], 279hypothetical protein
53gbs0408430328..430711 [+], 384hypothetical protein
54gbs0409430716..431027 [+], 312hypothetical protein
55gbs0410431161..432489 [+], 1329hypothetical proteinIntegrase 
56gbs0411432906..433706 [+], 801hypothetical protein
57trmB433696..434331 [+], 636tRNA (guanine-N(7)-)-methyltransferase
58gbs0413434818..435297 [+], 480hypothetical protein
59nusA435333..436484 [+], 1152transcription elongation factor NusA
60gbs0415436506..436802 [+], 297hypothetical protein
61gbs0416436795..437097 [+], 303hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins49Fasta
(1) Brochet M; Da Cunha V; Couve E; Rusniok C; Trieu-Cuot P; Glaser P (2009). Atypical association of DDE transposition with conjugation specifies a new family of mobile elements. Mol Microbiol. 71(4):948-59. [PudMed:19183283] experimental
(2) Glaser P; Rusniok C; Buchrieser C; Chevalier F; Frangeul L; Msadek T; Zouine M; Couve E; Lalioui L; Poyart C; Trieu-Cuot P; Kunst F (2002). Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease. Mol Microbiol. 45(6):1499-513. [PudMed:12354221]
 
experimental experimental literature