ICEberg
I. Information of ICE
ICEberg ID407
Name YAPI(IP31758) This is a predicted ICE derived from literature
FamilyICEYe1
OrganismYersinia pseudotuberculosis IP 31758
Size (bp)64694
GC content [Genome] (%)47.98[47.54]
Insertion sitetRNA-Phe
FunctionPathogenicity
Species that ICE can be transferred to-
Nucleotide SequenceCP000720 (complete ICE sequence in this genome)
Replicon chromosome (4723306 bp, BioProject:16070) [NC_009708]
Genome coordinates4157207..4221900 
Putative oriT region -
Putative relaxase coordinates: 4158523..4159719; Locus tag: YpsIP31758_3687;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of YAPI(IP31758) is not available.



The graph information of YAPI(IP31758) components from CP000720
Complete gene list of YAPI(IP31758) from CP000720
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1YpsIP31758_36834153449..4154006 [-], 558iron-sulfur cluster-binding protein
2YpsIP31758_36844154029..4156044 [-], 2016putative anaerobic formate dehydrogenase, iron-sulfur subunit
3YpsIP31758_36854156464..4157039 [+], 576transcriptional regulator, TetR family
4YpsIP31758_36864157513..4158481 [-], 969putative phage integraseIntegrase 
5YpsIP31758_36874158523..4159719 [-], 1197putative helicaseRelaxase, MOBH Family
6YpsIP31758_36884159911..4160558 [+], 648conserved domain protein
7YpsIP31758_36894160572..4161477 [-], 906conserved hypothetical protein
8YpsIP31758_36904161587..4162558 [-], 972antirestriction protein
9YpsIP31758_36914163226..4163657 [+], 432conserved hypothetical protein
10YpsIP31758_36924163688..4167947 [+], 4260RHS/YD repeat protein
11YpsIP31758_36934167963..4168580 [+], 618conserved hypothetical protein
12YpsIP31758_36944168820..4169257 [+], 438hypothetical protein
13YpsIP31758_36954169387..4169941 [+], 555conserved hypothetical protein
14YpsIP31758_36964170053..4170577 [+], 525conserved hypothetical protein
15YpsIP31758_36974170921..4171811 [-], 891conserved hypothetical protein
16YpsIP31758_36984172940..4173236 [+], 297conserved domain proteinTfc20, T4SS component 
17YpsIP31758_36994173268..4174791 [-], 1524putative membrane proteinTfc19, T4SS component 
18YpsIP31758_37004174791..4176197 [-], 1407conserved hypothetical proteinTfc22, T4SS component 
19YpsIP31758_37014176218..4177171 [-], 954conserved hypothetical proteinTfc23, T4SS component 
20YpsIP31758_37024177168..4177572 [-], 405conserved hypothetical proteinTfc24, T4SS component 
21YpsIP31758_37034178309..4180441 [+], 2133conserved hypothetical protein
22YpsIP31758_37044181327..4182028 [+], 702putative lipoprotein
23YpsIP31758_37054182460..4185306 [-], 2847conserved hypothetical proteinTfc16, T4SS component 
24YpsIP31758_37064185306..4185707 [-], 402putative lipoproteinTfc15, T4SS component 
25YpsIP31758_37074185720..4187237 [-], 1518conserved hypothetical proteinTfc14, T4SS component 
26YpsIP31758_37084187234..4188100 [-], 867conserved hypothetical proteinTfc13, T4SS component 
27YpsIP31758_37094188097..4188750 [-], 654conserved hypothetical proteinTfc12, T4SS component 
28YpsIP31758_37104188747..4189121 [-], 375conserved hypothetical proteinTfc11, T4SS component 
29YpsIP31758_37114189131..4189481 [-], 351conserved hypothetical proteinTfc10, T4SS component 
30YpsIP31758_37124189497..4189742 [-], 246hypothetical protein
31YpsIP31758_37134189742..4190050 [-], 309plasmid conserved hypothetical protein, RAQPRD familyTfc9, T4SS component 
32YpsIP31758_37144190571..4191458 [-], 888hypothetical protein
33YpsIP31758_37154191576..4193381 [-], 1806conserved hypothetical protein
34YpsIP31758_37164193378..4194616 [-], 1239conserved hypothetical protein
35YpsIP31758_37174194737..4195489 [-], 753conserved hypothetical proteinTfc8, T4SS component 
36YpsIP31758_37184195489..4197609 [-], 2121conserved hypothetical proteinTfc6, T4SS component 
37YpsIP31758_37194197668..4198189 [-], 522conserved hypothetical proteinTfc5, T4SS component 
38YpsIP31758_37204198186..4198824 [-], 639transglycosylase SLT domain proteinTfc4, T4SS component 
39YpsIP31758_37214198803..4199621 [-], 819conserved hypothetical proteinTfc3, T4SS component 
40YpsIP31758_37224199713..4200045 [-], 333conserved hypothetical protein
41YpsIP31758_37234200035..4200241 [-], 207hypothetical protein
42YpsIP31758_37244200453..4200809 [+], 357DNA binding protein
43YpsIP31758_37254200871..4201002 [+], 132hypothetical protein
44YpsIP31758_37264201125..4202057 [-], 933putative transposase
45YpsIP31758_37274202151..4203428 [-], 1278bacterial shufflon protein
46YpsIP31758_37284203432..4204100 [-], 669type IV prepilin peptidase
47pilS4204097..4204684 [-], 588type IV pilus biogenesis protein
48pilR4204699..4205799 [-], 1101type IV pilus biogenesis protein PilR
49YpsIP31758_37314205801..4207354 [-], 1554type IV secretion system proteinTraJ_I, T4SS component 
50pilP14207364..4207858 [-], 495type IV pilus biogenesis protein PilP
51YpsIP31758_37334207845..4209182 [-], 1338pilin accessory protein PilO
52YpsIP31758_37344209185..4210777 [-], 1593type IVB pilus formation outer membrane protein, R64 PilN family
53YpsIP31758_37354210791..4211228 [-], 438PilM protein
54YpsIP31758_37364211230..4212300 [-], 1071pilus biogenesis proteinTfc2, T4SS component 
55YpsIP31758_37374212438..4212824 [-], 387PIN domain protein
56YpsIP31758_37384212821..4213054 [-], 234prevent-host-death family protein
57YpsIP31758_37394213225..4213656 [-], 432conserved hypothetical protein
58YpsIP31758_37404213859..4214401 [-], 543conserved hypothetical protein
59YpsIP31758_37414214398..4214517 [-], 120hypothetical protein
60YpsIP31758_37424214702..4215460 [-], 759conserved hypothetical protein
61YpsIP31758_37434215620..4216819 [-], 1200conserved hypothetical protein
62YpsIP31758_37444217055..4217216 [-], 162conserved hypothetical protein
63YpsIP31758_37454217285..4217866 [-], 582conserved hypothetical protein
64YpsIP31758_37464217863..4219509 [-], 1647conserved hypothetical protein
65dnaB24219538..4220899 [-], 1362replicative DNA helicase
66YpsIP31758_37484220892..4221773 [-], 882conserved hypothetical protein
67YpsIP31758_37494222334..4224904 [-], 2571viral enhancin protein
68YpsIP31758_37504224919..4225086 [-], 168conserved hypothetical protein
69YpsIP31758_37514225316..4225741 [+], 426conserved hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins63Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
(2) Eppinger M; Rosovitz MJ; Fricke WF; Rasko DA; Kokorina G; Fayolle C; Lindler LE; Carniel E; Ravel J (2007). The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet. 3(8):e142. [PudMed:17784789]
 
in_silico in silico analysis literature