ICEberg
I. Information of ICE
ICEberg ID882
Name TnGBS2.5 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus agalactiae 1122
Size (bp)38209
GC content [Genome] (%)34.53
Insertion siterpmH
Function-
Species that ICE can be transferred to-
Nucleotide SequenceKC460338 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates7439..45647 
Putative oriT region -
Putative relaxase coordinates: 15058..16686;   Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of TnGBS2.5 is not available.



The graph information of TnGBS2.5 components from KC460338
Complete gene list of TnGBS2.5 from KC460338
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-2979..4523 [-], 1545DltA
2-4660..5847 [-], 1188DltS
3-5847..6521 [-], 675DltR
4rpmH6877..7011 [-], 135RpmH
5-7439..8791 [-], 1353transposaseIntegrase 
6-8943..9767 [-], 825hypothetical protein
7-9971..11029 [+], 1059hypothetical protein
8-11207..11485 [-], 279hypothetical protein
9-11512..12309 [-], 798hypothetical protein
10-12388..12768 [-], 381hypothetical protein
11-12890..13474 [-], 585hypothetical protein
12-13595..14146 [-], 552hypothetical protein
13-14225..15022 [-], 798hypothetical protein
14-15058..16686 [-], 1629hypothetical proteinRelaxase, MOBP Family
15-16658..17032 [-], 375hypothetical protein
16-17335..17640 [-], 306hypothetical protein
17-17698..22017 [-], 4320hypothetical protein
18-22031..22387 [-], 357hypothetical protein
19-22436..24172 [-], 1737hypothetical protein
20-24406..26472 [-], 2067hypothetical proteinT4CP 
21-26472..26963 [-], 492hypothetical protein
22-26981..27784 [-], 804hypothetical protein
23-28075..28461 [-], 387hypothetical protein
24-28473..29078 [-], 606hypothetical proteinPrgL, T4SS component 
25-29095..31263 [-], 2169hypothetical proteinPrgK, T4SS component 
26-32917..34434 [-], 1518hypothetical proteinPrgJ, T4SS component 
27-34379..34735 [-], 357hypothetical protein
28-34792..35544 [-], 753hypothetical proteinPrgH, T4SS component 
29-35597..36169 [-], 573hypothetical protein
30-36684..41228 [-], 4545hypothetical protein
31-41321..42106 [-], 786hypothetical protein
32-42117..42443 [-], 327hypothetical protein
33-42678..43814 [-], 1137hypothetical protein
34-44168..45523 [-], 1356hypothetical protein
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins30Fasta
(1) Guerillot R; Da Cunha V; Sauvage E; Bouchier C; Glaser P (2013). Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol. 195(9):1979-90. [PudMed:23435978] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature