ICEberg
I. Information of ICE
ICEberg ID883
Name TnGBS2.6 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus agalactiae 2584
Size (bp)42686
GC content [Genome] (%)34.4
Insertion siterplJ
Function-
Species that ICE can be transferred to-
Nucleotide SequenceKC492042 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..42686 
Putative oriT region -
Putative relaxase coordinates: 7957..9591; Locus tag: TnGBS2.6_10c;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of TnGBS2.6 is not available.



The graph information of TnGBS2.6 components from KC492042
Complete gene list of TnGBS2.6 from KC492042
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1TnGBS2.6_01c458..1792 [-], 1335DDE transposase UPF0236 familyIntegrase 
2TnGBS2.6_02c1959..2240 [-], 282hypothetical protein
3TnGBS2.6_03c2252..3049 [-], 798ParA family protein
4TnGBS2.6_04c3292..3657 [-], 366hypothetical protein
5TnGBS2.6_05c3777..4361 [-], 585hypothetical protein
6TnGBS2.6_064707..5081 [+], 375hypothetical protein
7TnGBS2.6_075273..6070 [+], 798hypothetical protein
8TnGBS2.6_09c7327..7713 [-], 387hypothetical protein
9TnGBS2.6_10c7957..9591 [-], 1635relaxaseRelaxase, MOBP Family
10TnGBS2.6_11c9563..9937 [-], 375hypothetical protein
11TnGBS2.6_12c10602..15242 [-], 4641putative primase
12TnGBS2.6_13c15291..17027 [-], 1737putative DNA topoisomerase
13TnGBS2.6_14c17261..19327 [-], 2067VirD4 domain protein familyT4CP 
14TnGBS2.6_15c19327..19818 [-], 492hypothetical protein
15TnGBS2.6_16c19832..20635 [-], 804hypothetical protein
16TnGBS2.6_17c20929..21321 [-], 393putative single strand binding protein
17TnGBS2.6_18c21333..21938 [-], 606hypothetical proteinPrgL, T4SS component 
18TnGBS2.6_19c21953..24613 [-], 2661VirB1 domain protein familyPrgK, T4SS component 
19TnGBS2.6_21c27865..29379 [-], 1515hypothetical proteinPrgJ, T4SS component 
20TnGBS2.6_22c29324..29680 [-], 357hypothetical protein
21TnGBS2.6_23c29737..30492 [-], 756VirB6 domain proteinPrgH, T4SS component 
22TnGBS2.6_24c30543..31112 [-], 570hypothetical protein
23TnGBS2.6_25c31627..36171 [-], 4545LPXTG surface protein
24TnGBS2.6_27c37031..39592 [-], 2562hypothetical proteinPrgA, T4SS component 
25TnGBS2.6_28c39650..40435 [-], 786LPXTG protein
26TnGBS2.6_29c40446..40772 [-], 327hypothetical protein
27TnGBS2.6_30c41164..42084 [-], 921putative replication initiation protein Rep
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins27Fasta
(1) Guerillot R; Da Cunha V; Sauvage E; Bouchier C; Glaser P (2013). Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol. 195(9):1979-90. [PudMed:23435978] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature