ICEberg
I. Information of IME
ICEberg ID238_IME
Name tISCpe8  This IME is derived from experimental literature
Family-
OrganismClostridium perfringens
Size (bp)1964 bp
GC content [Genome] (%)-
Insertion siteAT-rich regions
Functionlnu(P) (lincomycin)
Species that IME can be transferred to-
Nucleotide SequenceFJ589781 (complete IME sequence in this GenBank file)
Replicon-
Coordinates1..1964
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The Interaction Network among ICE/IME/CIME/plasmid


Detailed Informatioin of the Interaction Network
# IME  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1tISCpe8  Tn916 [ICE] experimentalin trans Clostridium perfringens JIR4225 Clostridium perfringens JIR4394 19684139

experimental This is an interactioin derived from experimental literature


The graph information of tISCpe8  components from FJ589781
Complete gene list of tISCpe8  from FJ589781
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1tnp101..1147 [+], 1047transposase
2-1303..1803 [+], 501lincosamide nucleotidyltransferase
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins2Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]
(3) Lyras D; Adams V; Ballard SA; Teng WL; Howarth PM; Crellin PK; Bannam TL; Songer JG; Rood JI (2009). tISCpe8, an IS1595-family lincomycin resistance element located on a conjugative plasmid in Clostridium perfringens. J Bacteriol. 191(20):6345-51. [PudMed:19684139]