SecReT4
T4SS ID189
StrainAgrobacterium sp. H13-3
Repliconplasmid pAspH13-3a [Browse all T4SS(s) in this replicon]
AccessionNC_015184
Location286239..288158; 348857..358462
NameVirB
Functionconjugation
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number111111111
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_015184
Region 1: 286239..288158
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1AGROH133_RS27890282591..282764 [+], 174503402673hypothetical protein 
2AGROH133_RS24820282817..283029 [-], 213646816659hypothetical protein 
3AGROH133_RS24825283116..283541 [+], 426501454683helix-turn-helix transcriptional regulator 
4AGROH133_RS24830283687..284631 [-], 945501454684aromatic alcohol reductase 
5AGROH133_RS27895284807..285100 [-], 2941830350240hypothetical protein 
6AGROH133_RS24835285097..285375 [-], 279503402676HU family DNA-binding protein 
7AGROH133_RS24840285409..285720 [-], 312503402677WGR domain-containing protein 
8AGROH133_RS24845 (traG)286239..288158 [-], 1920503402680Ti-type conjugative transfer system protein TraG 
9AGROH133_RS24850288155..288388 [-], 234503402681conjugal transfer protein TraD 
10AGROH133_RS24855288378..288665 [-], 288503402682TraC family protein 
 
Region 2: 348857..358462
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1AGROH133_RS25120343980..344414 [+], 435503402735winged helix-turn-helix transcriptional regulator 
2AGROH133_RS25125344469..345215 [+], 747503402736SDR family oxidoreductase 
3AGROH133_RS25130345387..345734 [+], 348754047824hypothetical protein 
4AGROH133_RS25135345849..346307 [-], 459754047825hypothetical protein 
5AGROH133_RS25140346418..346729 [-], 312503402740hypothetical protein 
6AGROH133_RS25145347098..347502 [-], 405503402742host attachment protein 
7AGROH133_RS25150347860..348222 [-], 363503402743transcriptional regulator 
8AGROH133_RS25160348857..349546 [+], 690503402745type IV secretion protein AvhB1 
9AGROH133_RS25165349543..349842 [+], 300503402746TrbC/VIRB2 family protein 
10AGROH133_RS25170349845..350186 [+], 342503402747type IV secretion system protein VirB3 
11AGROH133_RS25175350179..352560 [+], 2382503402748VirB4 family type IV secretion/conjugal transfer ATPase 
12AGROH133_RS25180 (virB5)352560..353258 [+], 699503402749P-type DNA transfer protein VirB5 
13AGROH133_RS25185353255..353488 [+], 234754047826EexN family lipoprotein 
14AGROH133_RS25190353493..354428 [+], 936503402751type IV secretion system protein 
15AGROH133_RS25195354464..354730 [+], 267503402752hypothetical protein 
16AGROH133_RS25200354734..355405 [+], 672489612807virB8 family protein 
17AGROH133_RS25205 (virB9)355405..356256 [+], 852754047876P-type conjugative transfer protein VirB9 
18AGROH133_RS25210 (virB10)356271..357443 [+], 1173503402754type IV secretion system protein VirB10 
19AGROH133_RS25215 (virB11)357452..358462 [+], 1011503402755P-type DNA transfer ATPase VirB11 
20AGROH133_RS25220358805..359125 [-], 321646816860winged helix-turn-helix transcriptional regulator 
21AGROH133_RS25225359611..360570 [+], 960503402756helix-turn-helix transcriptional regulator 
22AGROH133_RS25230 (rnk)360984..361397 [-], 414489612795nucleoside diphosphate kinase regulator 
23AGROH133_RS25235361917..362351 [+], 435754047827GreA/GreB family elongation factor 
24AGROH133_RS25240362551..363426 [+], 876908646370DMT family transporter 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Wibberg D; Blom J; Jaenicke S; Kollin F; Rupp O; Scharf B; Schneiker-Bekel S; Sczcepanowski R; Goesmann A; Setubal JC; Schmitt R; Puhler A; Schluter A (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. J Biotechnol. 155(1):50-62. [PudMed:21329740]