SecReT4

T4SS
References

T4SS ID	189
Strain	Agrobacterium sp. H13-3
Replicon	plasmid pAspH13-3a [Browse all T4SS(s) in this replicon]
Accession	NC_015184
Location	286239..288158; 348857..358462
Name	VirB
Function	conjugation
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	1	1	1	1	1	1	1	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_015184
Region 1: 286239..288158

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	AGROH133_RS27890	282591..282764 [+], 174	503402673	hypothetical protein
2	AGROH133_RS24820	282817..283029 [-], 213	646816659	hypothetical protein
3	AGROH133_RS24825	283116..283541 [+], 426	501454683	helix-turn-helix transcriptional regulator
4	AGROH133_RS24830	283687..284631 [-], 945	501454684	aromatic alcohol reductase
5	AGROH133_RS27895	284807..285100 [-], 294	1830350240	hypothetical protein
6	AGROH133_RS24835	285097..285375 [-], 279	503402676	HU family DNA-binding protein
7	AGROH133_RS24840	285409..285720 [-], 312	503402677	WGR domain-containing protein
8	AGROH133_RS24845 (traG)	286239..288158 [-], 1920	503402680	Ti-type conjugative transfer system protein TraG
9	AGROH133_RS24850	288155..288388 [-], 234	503402681	conjugal transfer protein TraD
10	AGROH133_RS24855	288378..288665 [-], 288	503402682	TraC family protein

Region 2: 348857..358462

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	AGROH133_RS25120	343980..344414 [+], 435	503402735	winged helix-turn-helix transcriptional regulator
2	AGROH133_RS25125	344469..345215 [+], 747	503402736	SDR family oxidoreductase
3	AGROH133_RS25130	345387..345734 [+], 348	754047824	hypothetical protein
4	AGROH133_RS25135	345849..346307 [-], 459	754047825	hypothetical protein
5	AGROH133_RS25140	346418..346729 [-], 312	503402740	hypothetical protein
6	AGROH133_RS25145	347098..347502 [-], 405	503402742	host attachment protein
7	AGROH133_RS25150	347860..348222 [-], 363	503402743	transcriptional regulator
8	AGROH133_RS25160	348857..349546 [+], 690	503402745	type IV secretion protein AvhB1
9	AGROH133_RS25165	349543..349842 [+], 300	503402746	TrbC/VIRB2 family protein
10	AGROH133_RS25170	349845..350186 [+], 342	503402747	type IV secretion system protein VirB3
11	AGROH133_RS25175	350179..352560 [+], 2382	503402748	VirB4 family type IV secretion/conjugal transfer ATPase
12	AGROH133_RS25180 (virB5)	352560..353258 [+], 699	503402749	P-type DNA transfer protein VirB5
13	AGROH133_RS25185	353255..353488 [+], 234	754047826	EexN family lipoprotein
14	AGROH133_RS25190	353493..354428 [+], 936	503402751	type IV secretion system protein
15	AGROH133_RS25195	354464..354730 [+], 267	503402752	hypothetical protein
16	AGROH133_RS25200	354734..355405 [+], 672	489612807	virB8 family protein
17	AGROH133_RS25205 (virB9)	355405..356256 [+], 852	754047876	P-type conjugative transfer protein VirB9
18	AGROH133_RS25210 (virB10)	356271..357443 [+], 1173	503402754	type IV secretion system protein VirB10
19	AGROH133_RS25215 (virB11)	357452..358462 [+], 1011	503402755	P-type DNA transfer ATPase VirB11
20	AGROH133_RS25220	358805..359125 [-], 321	646816860	winged helix-turn-helix transcriptional regulator
21	AGROH133_RS25225	359611..360570 [+], 960	503402756	helix-turn-helix transcriptional regulator
22	AGROH133_RS25230 (rnk)	360984..361397 [-], 414	489612795	nucleoside diphosphate kinase regulator
23	AGROH133_RS25235	361917..362351 [+], 435	754047827	GreA/GreB family elongation factor
24	AGROH133_RS25240	362551..363426 [+], 876	908646370	DMT family transporter

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Wibberg D; Blom J; Jaenicke S; Kollin F; Rupp O; Scharf B; Schneiker-Bekel S; Sczcepanowski R; Goesmann A; Setubal JC; Schmitt R; Puhler A; Schluter A (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. J Biotechnol. 155(1):50-62. [PudMed:21329740]