SecReT4

T4SS
References

T4SS ID	189
Strain	Agrobacterium sp. H13-3
Replicon	plasmid pAspH13-3a [Browse all T4SS(s) in this replicon]
Accession	NC_015184
Location	286239..288158; 348857..358462
Name	VirB
Function	conjugation
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	1	1	1	1	1	1	1	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_015184
Region 1: 286239..288158

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	AGROH133_14644	282419..282592 [-], 174	325168602	hypothetical protein
2	AGROH133_14645	282591..282764 [+], 174	325168603	hypothetical protein
3	AGROH133_14646	282817..283110 [-], 294	325168604	hypothetical protein
4	AGROH133_14649	283116..283541 [+], 426	325168605	transcriptional regulator
5	AGROH133_14650	283687..284631 [-], 945	325168606	NmrA family protein
6	AGROH133_14651	284825..284947 [+], 123	325168607	hypothetical protein
7	AGROH133_14652	285097..285375 [-], 279	325168608	DNA binding protein
8	AGROH133_14653	285409..285720 [-], 312	325168609	hypothetical protein
9	AGROH133_14654	285763..285951 [-], 189	325168610	hypothetical protein
10	AGROH133_14656	286147..286242 [-], 96	325168611	hypothetical protein
11	AGROH133_14658	286239..288158 [-], 1920	325168612	conjugal transfer coupling protein TraG	VirD4
12	AGROH133_14663	288155..288388 [-], 234	325168613	conjugal transfer protein D
13	AGROH133_14664	288378..288665 [-], 288	325168614	conjugal transfer protein C

Region 2: 348857..358462

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	AGROH133_14773	343980..344414 [+], 435	325168670	MarR family transcriptional regulator
2	AGROH133_14774	344469..345215 [+], 747	325168671	short chain dehydrogenase
3	AGROH133_14775	345223..345339 [-], 117	325168672	hypothetical protein
4	AGROH133_14776	345444..345734 [+], 291	325168673	hypothetical protein
5	AGROH133_14777	345849..346238 [-], 390	325168674	hypothetical protein
6	AGROH133_14779	346418..346729 [-], 312	325168675	hypothetical protein
7	AGROH133_14781	346912..347004 [-], 93	325168676	hypothetical protein
8	AGROH133_14782	347098..347502 [-], 405	325168677	hypothetical protein
9	AGROH133_14783	347860..348222 [-], 363	325168678	transcriptional regulator protein
10	AGROH133_14784	348316..348855 [+], 540	325168679	hypothetical protein
11	AGROH133_14786	348857..349546 [+], 690	325168680	type IV secretion protein AvhB1	VirB1
12	AGROH133_14787	349543..349842 [+], 300	325168681	type IV secretion protein AvhB2	VirB2
13	AGROH133_14792	349845..350186 [+], 342	325168682	type IV secretion protein AvhB3	VirB3
14	AGROH133_14794	350179..352560 [+], 2382	325168683	type IV secretion protein AvhB4	VirB4
15	AGROH133_14795	352560..353258 [+], 699	325168684	type IV secretion protein AvhB5	VirB5
16	AGROH133_14797	353330..353488 [+], 159	325168685	hypothetical protein
17	AGROH133_14798	353493..354428 [+], 936	325168686	type IV secretion protein AvhB6	VirB6
18	AGROH133_14804	354464..354730 [+], 267	325168687	type IV secretion protein AvhB7	VirB7
19	AGROH133_14805	354734..355405 [+], 672	325168688	type IV secretion protein AvhB8	VirB8
20	AGROH133_14807	355402..356256 [+], 855	325168689	type IV secretion protein AvhB9	VirB9
21	AGROH133_14809	356271..357443 [+], 1173	325168690	type IV secretion protein AvhB10	VirB10
22	AGROH133_14811	357452..358462 [+], 1011	325168691	type IV secretion protein AvhB11	VirB11
23	AGROH133_14812	358805..359080 [-], 276	325168692	ArsR family transcriptional regulator
24	AGROH133_14814	359611..360570 [+], 960	325168693	AraC family transcriptional regulator
25	AGROH133_14815	360984..361397 [-], 414	325168694	nucleoside diphosphate kinase regulator
26	AGROH133_14816	361600..361791 [-], 192	325168695	hypothetical protein
27	AGROH133_14817	361812..362351 [+], 540	325168696	nucleoside diphosphate kinase regulator
28	AGROH133_14818	362524..363426 [+], 903	325168697	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Wibberg D; Blom J; Jaenicke S; Kollin F; Rupp O; Scharf B; Schneiker-Bekel S; Sczcepanowski R; Goesmann A; Setubal JC; Schmitt R; Puhler A; Schluter A (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. J Biotechnol. 155(1):50-62. [PudMed:21329740]