StrainHelicobacter pylori SJM180
Repliconchromosome [Browse all T4SS(s) in this replicon]
Functioneffector translocation
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components

The information of T4SS components from NC_014560
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1HPSJM_02535501879..503198 [+], 1320308184287hypothetical protein 
2HPSJM_02540503203..504582 [+], 1380308184288glycolate oxidase, subunit GlcD 
3HPSJM_02545504605..505369 [+], 765308184289dihydrodipicolinate reductase 
4HPSJM_02550505656..505775 [+], 120308184290hypothetical protein 
5HPSJM_02555505825..506052 [+], 228308184291cag pathogenicity island protein B 
6HPSJM_02560506195..506542 [+], 348308184292cag pathogenicity island protein C  CagC
7HPSJM_02565506517..507167 [+], 651308184293cag pathogenicity island protein D  CagD
8HPSJM_02570507176..510127 [+], 2952308184294cag pathogenicity island protein E  CagE
9HPSJM_02575510129..510935 [+], 807308184295cag island protein  CagF
10HPSJM_02580510990..511418 [+], 429308184296cag pathogenicity island protein (cag21)  CagG
11HPSJM_02585511419..511616 [-], 198308184297hypothetical protein 
12HPSJM_02590511615..512547 [+], 933308184298cag pathogenicity island protein H  CagH
13HPSJM_02595512558..513703 [+], 1146308184299cag pathogenicity island protein I  CagI
14HPSJM_02600513700..514413 [+], 714308184300cag pathogenicity island protein L  CagL
15HPSJM_02605514495..515415 [-], 921308184301cag island protein  CagN
16HPSJM_02610515430..516560 [-], 1131308184302cag island protein  CagM
17HPSJM_02615517762..518142 [+], 381308184303cag pathogenicity island protein Q 
18HPSJM_02620518582..519181 [+], 600308184304CAG pathogenicity island protein 13 
19HPSJM_02625519383..520225 [-], 843308184305CAG pathogenicity island protein 12  CagT
20HPSJM_02630520261..520917 [-], 657308184306cag island protein  CagU
21HPSJM_02635521298..522056 [+], 759308184307cag pathogenicity island protein V  CagV
22HPSJM_02640522061..523668 [+], 1608308184308cag pathogenicity island protein W  CagW
23HPSJM_02645523721..525286 [+], 1566308184309cag pathogenicity island protein X  CagX
24HPSJM_02650525301..530781 [+], 5481308184310cag island protein  CagY
25HPSJM_02655530916..531515 [+], 600308184311cag pathogenicity island protein (cag6)  CagZ
26HPSJM_02660531520..532512 [+], 993308184312cag island protein, DNA transfer protein  Cagalpha
27HPSJM_02665532521..534767 [+], 2247308184313cag island protein, DNA transfer protein  Cagbeta
28HPSJM_02670534886..535395 [-], 510308184314cag pathogenicity island protein Gamma  Caggamma
29HPSJM_02675535405..536850 [-], 1446308184315cag pathogenicity island protein 3  Cagdelta
30HPSJM_02680536850..537200 [-], 351308184316cag pathogenicity island protein Epsilon 
31HPSJM_02685537308..537655 [-], 348308184317cag pathogenicity island protein (cag1) 
32HPSJM_02690537827..538681 [+], 855308184318hypothetical protein 
33HPSJM_02695538912..540357 [-], 1446308184319glutamine synthetase 
34HPSJM_02700540581..540883 [+], 303308184320hypothetical protein 
35HPSJM_02705 (rplI)541275..541724 [+], 45030818432150S ribosomal protein L9 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes

CagA; Peptidoglycan

The information of protein effectors
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  *
1HPSJM_02765 549621..553166 [+], 3546308184331cag pathogenicity island protein (cag26)  CagA

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Proteins        Genes
Identified as part of this study from NC_014560