SecReT4

T4SS
References

T4SS ID	536
Strain	Aliivibrio salmonicida LFI1238
Replicon	plasmid pVSAL840 [Browse all T4SS(s) in this replicon]
Accession	NC_011311
Location	111..27827
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	1	1	1

The information of T4SS components from NC_011311

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	VSAL_p840_01 (traY)	111..281 [+], 171	215778351	conjugative transfer protein TraY	TraY_F
2	VSAL_p840_02 (traA)	423..704 [+], 282	215778352	conjugative transfer protein TraA, putative fimbrial protein precursor	TraA_F
3	VSAL_p840_03 (traL)	733..1035 [+], 303	215778353	conjugative transfer protein TraL	TraL_F
4	VSAL_p840_04 (traE)	1035..1595 [+], 561	215778354	conjugative transfer protein TraE	TraE_F
5	VSAL_p840_05 (traK)	1592..2347 [+], 756	215778355	conjugative transfer protein TraK	TraK_F
6	VSAL_p840_06 (traB)	2337..3767 [+], 1431	215778356	conjugative transfer protein TraB	TraB_F
7	VSAL_p840_07	3780..4181 [+], 402	215778357	putative lipoprotein, putative TraV protein	TraV_F
8	VSAL_p840_08 (traC)	4191..6722 [+], 2532	215778358	conjugative transfer protein TraC	TraC_F
9	VSAL_p840_09 (trbI)	6719..7066 [+], 348	215778359	conjugative transfer protein TrbI
10	VSAL_p840_10 (traW)	7063..7719 [+], 657	215778360	conjugative transfer protein TraW	TraW_F
11	VSAL_p840_11 (traU)	7732..8736 [+], 1005	215778361	conjugative transfer protein TraU	TraU_F
12	VSAL_p840_12	9050..9817 [+], 768	215778362	hypothetical protein, putative conjugative transfer protein TrbC	TrbC_F
13	VSAL_p840_13 (traN)	9821..11539 [+], 1719	215778363	conjugal transfer mating pair stabilization protein TraN	TraN_F
14	VSAL_p840_14 (traF)	11549..12292 [+], 744	215778364	conjugative transfer protein TraF	TraF_F
15	VSAL_p840_15	12282..13049 [+], 768	215778365	membrane protein
16	VSAL_p840_16 (trbB)	13119..13544 [+], 426	215778366	conjugative transfer protein TrbB
17	VSAL_p840_17 (traH)	13541..14926 [+], 1386	215778367	conjugative transfer protein TraH	TraH_F
18	VSAL_p840_18 (traG)	14923..17718 [+], 2796	215778368	conjugative transfer protein TraG	TraG_F
19	VSAL_p840_19	17817..18314 [+], 498	215778369	hypothetical protein
20	VSAL_p840_20 (traD)	18326..20404 [+], 2079	215778370	conjugative transfer protein TraD	TraD_F
21	VSAL_p840_21 (traI)	20545..26355 [+], 5811	215778371	protein TraI (DNA helicase I)	TraI_F
22	VSAL_p840_22	26399..26752 [-], 354	215778372	hypothetical protein
23	VSAL_p840_23 (pilT)	27390..27827 [-], 438	215778373	transglycosylase PilT	Orf169_F
24	VSAL_p840_24	27861..28256 [-], 396	215778374	hypothetical protein
25	VSAL_p840_25 (ardC)	28293..29294 [-], 1002	215778375	antirestriction protein ArdC
26	VSAL_p840_26	30133..30489 [-], 357	215778376	hypothetical protein
27	VSAL_p840_27	30649..31068 [-], 420	215778377	hypothetical protein
28	VSAL_p840_28 (hupA)	31361..31636 [+], 276	215778378	DNA-binding protein HU-alpha
29	VSAL_p840_29	31792..32052 [-], 261	215778379	hypothetical protein
30	VSAL_p840_30	32178..32468 [-], 291	215778380	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Hjerde E; Lorentzen MS; Holden MT; Seeger K; Paulsen S; Bason N; Churcher C; Harris D; Norbertczak H; Quail MA; Sanders S; Thurston S; Parkhill J; Willassen NP; Thomson NR (2008). The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay. BMC Genomics. 0.802777778. [PudMed:19099551]