T4SS ID	583
Strain	Vibrio cholerae MJ-1236
Replicon	chromosome 1 [Browse all T4SS(s) in this replicon]
Accession	NC_012668
Location	2962770..2970574; 2988974..3018443
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_012668
Region 1: 2962770..2970574
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	VCD_003660 (prfC)	2958347..2959936 [-], 1590	229608738	peptide chain release factor 3
2	VCD_003661	2960193..2960840 [-], 648	229608739	HTH-type transcriptional regulator for conjugative element SXT
3	VCD_003662	2960958..2961209 [+], 252	229608740	hypothetical protein
4	VCD_003663	2961265..2962134 [+], 870	229608741	hypothetical protein
5	VCD_003664	2962055..2962783 [+], 729	229608742	hypothetical protein
6	VCD_003665	2962770..2963318 [+], 549	229608743	soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	Orf169_F
7	VCD_003666	2963315..2963614 [+], 300	229608744	hypothetical protein
8	VCD_003667	2964666..2968235 [-], 3570	229608745	IncF plasmid conjugative transfer protein TraG	TraG_F
9	VCD_003668	2968239..2969627 [-], 1389	229608746	IncF plasmid conjugative transfer pilus assembly protein TraH	TraH_F
10	VCD_003669	2969630..2970574 [-], 945	229608747	IncF plasmid conjugative transfer pilus assembly protein TraF	TraF_F
11	VCD_003670	2970831..2971790 [-], 960	229608748	integron integrase
12	VCD_003671	2972078..2972551 [+], 474	229608749	dihydrofolate reductase
13	VCD_003672	2973754..2974122 [+], 369	229608750	hypothetical protein
14	VCD_003673	2974222..2974923 [+], 702	229608751	hypothetical protein
Region 2: 2988974..3018443
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	VCD_003684	2984772..2984915 [-], 144	229608762	hypothetical protein
2	VCD_003685	2984997..2985815 [-], 819	229608763	hypothetical protein
3	VCD_003686	2985895..2986314 [-], 420	229608764	single-stranded DNA-binding protein
4	VCD_003687	2986330..2986668 [-], 339	229608765	hypothetical protein
5	VCD_003688	2987024..2987626 [+], 603	229608766	hypothetical protein
6	VCD_003689	2987717..2988379 [-], 663	229608767	hypothetical protein
7	VCD_003690	2988410..2988883 [-], 474	229608768	hypothetical protein
8	VCD_003691	2988974..2992615 [-], 3642	229608769	IncF plasmid conjugative transfer protein TraN	TraN_F
9	VCD_003692	2992669..2993703 [-], 1035	229608770	IncF plasmid conjugative transfer pilus assembly protein TraU	TraU_F
10	VCD_003693	2993681..2994844 [-], 1164	229608771	hypothetical protein	TraW_F
11	VCD_003694	2994816..2995328 [-], 513	229608772	signal peptidase I
12	VCD_003695	2995312..2995659 [-], 348	229608773	hypothetical protein
13	VCD_003696	2995652..2998069 [-], 2418	229608774	IncF plasmid conjugative transfer pilus assembly protein TraC	TraC_F
14	VCD_003697	2998051..2998743 [-], 693	229608775	thiol:disulfide interchange protein DsbC
15	VCD_003698	2998888..3000333 [-], 1446	229608776	type 4 fimbriae expression regulatory protein pilR
16	VCD_003699	3000336..3001871 [-], 1536	229608777	hypothetical protein
17	VCD_003700	3001881..3002990 [-], 1110	229608778	hypothetical protein
18	VCD_003701	3002987..3005716 [-], 2730	229608779	hypothetical protein
19	VCD_003702	3006281..3007231 [-], 951	229608780	Ync
20	VCD_003703	3007212..3008045 [-], 834	229608781	Ynd
21	VCD_003704	3008223..3008609 [-], 387	229608782	TraA	TraA_F
22	VCD_003705	3008606..3009256 [-], 651	229608783	conjugative transfer protein TraV	TraV_F
23	VCD_003706	3009253..3010545 [-], 1293	229608784	IncF plasmid conjugative transfer pilus assembly protein TraB	TraB_F
24	VCD_003707	3010542..3011444 [-], 903	229608785	IncF plasmid conjugative transfer pilus assembly protein TraK	TraK_F
25	VCD_003708	3011425..3012051 [-], 627	229608786	hypothetical protein	TraE_F
26	VCD_003709	3012048..3012335 [-], 288	229608787	IncF plasmid conjugative transfer pilus assembly protein TraL	TraL_F
27	VCD_003710	3012585..3013205 [+], 621	229608788	hypothetical protein
28	VCD_003711	3013232..3013876 [-], 645	229608789	conjugative transfer protein s043
29	VCD_003712	3013854..3014390 [-], 537	229608790	hypothetical protein
30	VCD_003713	3014424..3016244 [-], 1821	229608791	TraD	TraD_F
31	VCD_003714	3016293..3018443 [-], 2151	229608792	TraI	TraI_F
32	VCD_003715	3018598..3021249 [-], 2652	229608793	hypothetical protein
33	VCD_003716	3021293..3023368 [-], 2076	229608794	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICEVchBan9 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216]