SecReT4
T4SS ID685
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_009708
Location4172940..4212300
NameTfc
Functionconjugation
ClassificationType IVC; Type G
insolico This T4SS is identified in this study.

T4SS components
ComponentTfc1Tfc2Tfc3Tfc4Tfc5Tfc6Tfc7Tfc8Tfc9
Number011111011
ComponentTfc10Tfc11Tfc12Tfc13Tfc14Tfc15Tfc16Tfc17Tfc18
Number011111100
ComponentTfc19Tfc20Tfc21Tfc22Tfc23Tfc24
Number110111

The information of T4SS components from NC_009708
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1YPSIP31758_RS198404167963..4168580 [+], 618501054256hypothetical protein 
2YPSIP31758_RS198454168820..4169257 [+], 438501054257hypothetical protein 
3YPSIP31758_RS198504169387..4169941 [+], 555501054258RHS repeat-associated core domain-containing protein 
4YPSIP31758_RS198554169957..4170577 [+], 621752489776hypothetical protein 
5YPSIP31758_RS198604170921..4171811 [-], 891501054260integrase domain-containing protein 
6YPSIP31758_RS198654172940..4173236 [+], 297501054261hypothetical protein 
7YPSIP31758_RS198704173268..4174791 [-], 1524501054262conjugal transfer protein TraG 
8YPSIP31758_RS198754174791..4176197 [-], 1407501054263integrating conjugative element protein 
9YPSIP31758_RS198804176218..4177171 [-], 954501054264TIGR03756 family integrating conjugative element protein 
10YPSIP31758_RS198854177168..4177572 [-], 405501054265TIGR03757 family integrating conjugative element protein 
11YPSIP31758_RS198904178255..4180441 [+], 2187752489777AAA family ATPase 
12YPSIP31758_RS198954181327..4182028 [+], 702501054267toll/interleukin-1 receptor domain-containing protein 
13YPSIP31758_RS199004182460..4185306 [-], 2847501054268conjugative transfer ATPase 
14YPSIP31758_RS199054185306..4185710 [-], 4051567770467TIGR03751 family conjugal transfer lipoprotein 
15YPSIP31758_RS199104185720..4187237 [-], 1518501054270TIGR03752 family integrating conjugative element protein 
16YPSIP31758_RS199154187234..4188067 [-], 834752489876TIGR03749 family integrating conjugative element protein 
17YPSIP31758_RS199204188097..4188750 [-], 654501054274TIGR03746 family integrating conjugative element protein 
18YPSIP31758_RS199254188747..4189121 [-], 375501054276TIGR03750 family conjugal transfer protein 
19YPSIP31758_RS241204189131..4189481 [-], 351501054277TIGR03745 family integrating conjugative element membrane protein 
20YPSIP31758_RS241254189497..4189736 [-], 2401847706190TIGR03758 family integrating conjugative element protein 
21YPSIP31758_RS199404189742..4190050 [-], 309501054279RAQPRD family integrative conjugative element protein 
22YPSIP31758_RS199454190571..4191458 [-], 888501054280DUF2971 domain-containing protein 
23YPSIP31758_RS199504191576..4193381 [-], 1806501054281ATP-binding protein 
24YPSIP31758_RS199554193378..4194616 [-], 1239501054282SIR2 family protein 
25YPSIP31758_RS199604194737..4195489 [-], 753501054283TIGR03747 family integrating conjugative element membrane protein 
26YPSIP31758_RS19965 (traD)4195489..4197609 [-], 2121501054284type IV conjugative transfer system coupling protein TraD 
27YPSIP31758_RS199704197668..4198162 [-], 495752489877integrating conjugative element protein 
28YPSIP31758_RS199754198186..4198734 [-], 5491194714867transglycosylase SLT domain-containing protein 
29YPSIP31758_RS199804198803..4199570 [-], 768908574478TIGR03759 family integrating conjugative element protein 
30YPSIP31758_RS199854199713..4200045 [-], 333501054288hypothetical protein 
31YPSIP31758_RS199904200035..4200241 [-], 207501054289hypothetical protein 
32YPSIP31758_RS199954200453..4200809 [+], 357501054290helix-turn-helix transcriptional regulator 
33YPSIP31758_RS200004201125..4202057 [-], 933501054292Rpn family recombination-promoting nuclease/putative transposase 
34YPSIP31758_RS20005 (pilV)4202151..4203428 [-], 1278501054293shufflon system plasmid conjugative transfer pilus tip adhesin PilV 
35YPSIP31758_RS200104203432..4204100 [-], 669501054294prepilin peptidase 
36YPSIP31758_RS200154204097..4204684 [-], 588501054295type IV prepilin 
37YPSIP31758_RS200204204699..4205808 [-], 1110752489779type II secretion system F family protein 
38YPSIP31758_RS20025 (tadA)4205801..4207354 [-], 1554501054297Flp pilus assembly complex ATPase component TadA 
39YPSIP31758_RS20030 (pilP)4207364..4207858 [-], 495501054298type IV pilus biogenesis protein PilP 
40YPSIP31758_RS20035 (pilO2)4207845..4209182 [-], 1338501054299type 4b pilus protein PilO2 
41YPSIP31758_RS200404209185..4210777 [-], 1593501054300PilN family type IVB pilus formation outer membrane protein 
42YPSIP31758_RS20045 (pilM)4210791..4211228 [-], 438501054301type IV pilus biogenesis protein PilM 
43YPSIP31758_RS200504211230..4212300 [-], 1071501054302TcpQ domain-containing protein 
44YPSIP31758_RS200554212438..4212824 [-], 387501054303type II toxin-antitoxin system VapC family toxin 
45YPSIP31758_RS200604212821..4213054 [-], 234501054304type II toxin-antitoxin system prevent-host-death family antitoxin 
46YPSIP31758_RS200654213225..4213656 [-], 432501054305DUF29 domain-containing protein 
47YPSIP31758_RS200704213859..4214353 [-], 495880925348DUF3577 domain-containing protein 
48YPSIP31758_RS200754214702..4215460 [-], 759501054308TIGR03761 family integrating conjugative element protein 
49YPSIP31758_RS200804215620..4216819 [-], 1200501054309helix-turn-helix domain-containing protein 
50YPSIP31758_RS200854217055..4217285 [-], 231742321103hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) YAPI(IP32777) and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
Identified as part of this study from NC_009708