SecReT4
SecReT4 contains data from 1565 references related to type IV secretion systems (T4SSs). Last Update: Sep 30, 2019

Categories (Literatures contain following contents are categorized)
reviews experimental studies bioinformatics genome sequencing T4SS component T4SS effectors
conjugation DNA uptake and release effector translocation structural study protein interaction other
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Number of references found for the 'bioinformatics' category : 211

References
(1) Azam S, Parthasarathy S, Singh C, Kumar S, Siddavattam D (2019). Genome Organization and Adaptive Potential of Archetypal Organophosphate Degrading Sphingobium fuliginis ATCC 27551. Genome Biol Evol. 11(9):2557-2562. [PudMed:31504476]
(2) Sen R, Tagore S, De RK (2019). Cluster Quality based Non-Reductional (CQNR) oversampling technique and effector protein predictor based on 3D structure (EPP3D) of proteins. Comput Biol Med. 112:103374. [PudMed:31419629]
(3) Klinges JG, Rosales SM, McMinds R, Shaver EC, Shantz AA, Peters EC, Eitel M, Wörheide G, Sharp KH, Burkepile DE, Silliman BR, Vega Thurber RL (2019). Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov. ISME J. . [PudMed:31384012]
(4) Levican A, Ramos-Tapia I, Briceño I, Guerra F, Mena B, Varela C, Porte L (2019). Genomic Analysis of Chilean Strains of Campylobacter jejuni from Human Faeces. Biomed Res Int. 2019:1902732. [PudMed:31360704]
(5) Esna Ashari Z, Brayton KA, Broschat SL (2019). Prediction of T4SS Effector Proteins for Anaplasma phagocytophilum Using OPT4e, A New Software Tool. Front Microbiol. 10:1391. [PudMed:31293540]
(6) Yang R, Santos Garcia D, Pérez Montaño F, da Silva GM, Zhao M, Jiménez Guerrero I, Rosenberg T, Chen G, Plaschkes I, Morin S, Walcott R, Burdman S (2019). Complete Assembly of the Genome of an Acidovorax citrulli Strain Reveals a Naturally Occurring Plasmid in This Species. Front Microbiol. 10:1400. [PudMed:31281298]
(7) Noroy C, Lefrançois T, Meyer DF (2019). Searching algorithm for Type IV effector proteins (S4TE) 2.0: Improved tools for Type IV effector prediction, analysis and comparison in proteobacteria. PLoS Comput Biol. 15(3):e1006847. [PudMed:30908487]
(8) Zhang L, Wu Z, Wang X, Tan G, Song J (2019). Insights into the Draft Genome Sequence of the Kiwifruit-Associated Pathogenic Isolate Pseudomonas fluorescens AHK-1. Curr Microbiol. 76(5):552-557. [PudMed:30824950]
(9) Dias GM, de Sousa Pires A, Grilo VS, Castro MR, de Figueiredo Vilela L, Neves BC (2019). Comparative genomics of Paraburkholderia kururiensis and its potential in bioremediation, biofertilization, and biocontrol of plant pathogens. Microbiologyopen. 8(8):e00801. [PudMed:30811107]
(10) Singhal K, Mohanty S (2019). Genome organisation and comparative genomics of four novel Wolbachia genome assemblies from Indian Drosophila host. Funct Integr Genomics. 19(4):617-632. [PudMed:30798391]
(11) Watts TD, Vidor CJ, Awad MM, Lyras D, Rood JI, Adams V (2019). pCP13, a representative of a new family of conjugative toxin plasmids in Clostridium perfringen. Plasmid. 102:37-45. [PudMed:30790588]
(12) McDonald ND, Regmi A, Morreale DP, Borowski JD, Boyd EF (2019). CRISPR-Cas systems are present predominantly on mobile genetic elements in Vibrio species. BMC Genomics. 20(1):105. [PudMed:30717668]
(13) Sinha A, Li Z, Sun L, Carlow CKS (2019). Complete Genome Sequence of the Wolbachia wAlbB Endosymbiont of Aedes albopictus. Genome Biol Evol. 11(3):706-720. [PudMed:30715337]
(14) Esna Ashari Z, Brayton KA, Broschat SL (2019). Using an optimal set of features with a machine learning-based approach to predict effector proteins for Legionella pneumophila. PLoS One. 14(1):e0202312. [PudMed:30682021]
(15) Gomez-Valero L, Rusniok C, Carson D, Mondino S, Pérez-Cobas AE, Rolando M, Pasricha S, Reuter S, Demirtas J, Crumbach J, Descorps-Declere S, Hartland EL, Jarraud S, Dougan G, Schroeder GN, Frankel G, Buchrieser C (2019). More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells. Proc Natl Acad Sci U S A. 116(6):2265-2273. [PudMed:30659146]
(16) Pan Z, Liu J, Zhang Y, Chen S, Ma J, Dong W, Wu Z, Yao H (2019). A novel integrative conjugative element mediates transfer of multi-drug resistance between Streptococcus suis strains of different serotypes. Vet Microbiol. 229:110-116. [PudMed:30642585]
(17) Wang J, Yang B, An Y, Marquez-Lago T, Leier A, Wilksch J, Hong Q, Zhang Y, Hayashida M, Akutsu T, Webb GI, Strugnell RA, Song J, Lithgow T (2019). Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. Brief Bioinform. 20(3):931-951. [PudMed:29186295]
(18) Xiong Y, Wang Q, Yang J, Zhu X, Wei DQ (2018). PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method. Front Microbiol. 9:2571.. [PudMed:30416498]
(19) Dmowski M, Gołębiewski M, Kern-Zdanowicz I (2018). Characteristics of the Conjugative Transfer System of the IncM Plasmid pCTX-M3 and Identification of Its Putative Regulators. J Bacteriol. 200(18). pii: e00234-18. [PudMed:29986941]
(20) Pruneau L, Lebrigand K, Mari B, Lefrançois T, Meyer DF, Vachiery N (2018). Comparative Transcriptome Profiling of Virulent and Attenuated Ehrlichia ruminantium Strains Highlighted Strong Regulation of map1- and Metabolism Related Genes. Front Cell Infect Microbiol. 8:153. [PudMed:29868509]
(21) Sternon JF, Godessart P, Gonçalves de Freitas R, Van der Henst M, Poncin K, Francis N, Willemart K, Christen M, Christen B, Letesson JJ, De Bolle X (2018). Transposon Sequencing of Brucella abortus Uncovers Essential Genes for Growth In Vitro and Inside Macrophages. Infect Immun. 86(8). pii: e00312-18. [PudMed:29844240]
(22) Esna Ashari Z, Dasgupta N, Brayton KA, Broschat SL (2018). An optimal set of features for predicting type IV secretion system effector proteins for a subset of species based on a multi-level feature selection approach. PLoS One. 13(5):e0197041. [PudMed:29742157]
(23) Lamason RL, Kafai NM, Welch MD (2018). A streamlined method for transposon mutagenesis of Rickettsia parkeri yields numerous mutations that impact infection. PLoS One. 13(5):e0197012. [PudMed:29723287]
(24) Bakenhus I, Voget S, Poehlein A, Brinkhoff T, Daniel R, Simon M (2018). Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom. Stand Genomic Sci. 13:7. [PudMed:29682168]
(25) Waskito LA, Miftahussurur M, Lusida MI, Syam AF, Suzuki R, Subsomwong P, Uchida T, Hamdan M, Nasronudin, Yamaoka Y (2018). Distribution and clinical associations of integrating conjugative elements and cag pathogenicity islands of Helicobacter pylori in Indonesia. Sci Rep. 8(1):6073. [PudMed:29666390]
(26) Dias GM, Bidault A, Le Chevalier P, Choquet G, Der Sarkissian C, Orlando L, Medigue C, Barbe V, Mangenot S, Thompson CC, Thompson FL, Jacq A, Pichereau V, Paillard C (2018). Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs. Front Microbiol. 9:227. [PudMed:29515533]
(27) Zhang YY, Liang ZX, Li CS, Chang Y, Ma XQ, Yu L, Chen LA (2018). Whole-Genome Analysis of an Extensively Drug-Resistant Acinetobacter baumannii Strain XDR-BJ83: Insights into the Mechanisms of Resistance of an ST368 Strain from a Tertiary Care Hospital in China. Microb Drug Resist. 24(9):1259-1270. [PudMed:29489445]
(28) Makart L, Gillis A, Hinnekens P, Mahillon J (2018). A novel T4SS-mediated DNA transfer used by pXO16, a conjugative plasmid from Bacillus thuringiensis serovar israelensis. Environ Microbiol. 20(4):1550-1561. [PudMed:29488309]
(29) Zalguizuri A, Caetano-Anollés G, Lepek VC (2018). Phylogenetic profiling, an untapped resource for the prediction of secreted proteins and its complementation with sequence-based classifiers in bacterial type III, IV and VI secretion systems. Brief Bioinform. . [PudMed:29394318]
(30) Yao Y, Shen Y, Zhu L, Ni Y, Wang H, Shao S (2018). Preliminary study and bioinformatics analysis on the potential role of CagQ in type IV secretion system of H.pylori. Microb Pathog. 116:1-7. [PudMed:29306012]
(31) Timms VJ, Rockett R, Bachmann NL, Martinez E, Wang Q, Chen SC, Jeoffreys N, Howard PJ, Smith A, Adamson S, Gilmour R, Sheppeard V, Sintchenko V (2018). Genome Sequencing Links Persistent Outbreak of Legionellosis in Sydney (New South Wales, Australia) to an Emerging Clone of Legionella pneumophila Sequence Type 211. Appl Environ Microbiol. 84(5). pii: e02020-17. [PudMed:29247056]
(32) Liu CC, Chen CH, Tang CY, Chen KH, Chen ZF, Chang SH, Tsai CY, Liou ML (2018). Prevalence and comparative analysis of the type IV secretion system in Aggregatibacter actinomycetemcomitan. J Microbiol Immunol Infect. 51(2):278-285. [PudMed:28711435]
(33) An Y, Wang J, Li C, Leier A, Marquez-Lago T, Wilksch J, Zhang Y, Webb GI, Song J, Lithgow T. (2018). Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI. Brief Bioinform. 19(1):148-161. [PudMed:27777222]
(34) Miyoshi-Akiyama T, Tada T, Ohmagari N, Viet Hung N, Tharavichitkul P, Pokhrel BM, Gniadkowski M, Shimojima M, Kirikae T (2017). Emergence and Spread of Epidemic Multidrug-Resistant Pseudomonas aeruginosa. Genome Biol Evol. 9(12):3238-3245. [PudMed:29202180]
(35) Wallqvist A, Wang H, Zavaljevski N, Memišević V, Kwon K, Pieper R, Rajagopala SV, Reifman J (2017). Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions. PLoS One. 12(11):e0188071. [PudMed:29176882]
(36) Marasini D, Fakhr MK (2017). Complete Genome Sequences of Campylobacter jejuni Strains Isolated from Retail Chicken and Chicken Gizzards. Genome Announc. 5(47). pii: e01351-17. [PudMed:29167263]
(37) Bärlocher K, Hutter CAJ, Swart AL, Steiner B, Welin A, Hohl M, Letourneur F, Seeger MA, Hilbi H (2017). Structural insights into Legionella RidL-Vps29 retromer subunit interaction reveal displacement of the regulator TBC1D5. Nat Commun. 8(1):1543. [PudMed:29146912]
(38) Shames SR, Liu L, Havey JC, Schofield WB, Goodman AL, Roy CR (2017). Multiple Legionella pneumophila effector virulence phenotypes revealed through high-throughput analysis of targeted mutant libraries. Proc Natl Acad Sci U S A. 114(48):E10446-E10454. [PudMed:29133401]
(39) Wang Y, Guo Y, Pu X, Li M (2017). Effective prediction of bacterial type IV secreted effectors by combined features of both C-termini and N-termini. J Comput Aided Mol Des. 31(11):1029-1038. [PudMed:29127583]
(40) Li N, Jia H, Yang H, Ji B, Liu Y, Peng X, Cheng Y, Zhang W (2017). Preliminary screening of type IV secretion system in divergent geographic sources of Clostridium difficile. Exp Ther Med. 14(5):4405-4410. [PudMed:29104651]
(41) Rice DW, Sheehan KB, Newton ILG (2017). Large-Scale Identification of Wolbachia pipientis Effectors. Genome Biol Evol. 9(7):1925-1937. [PudMed:28854601]
(42) Megías E, Reis Junior FB, Ribeiro RA, Ollero FJ, Megías M, Hungria M (2017). Genome Sequence of Pantoea ananatis Strain AMG 501, a Plant Growth-Promoting Bacterium Isolated from Rice Leaves Grown in Paddies of Southern Spain. Genome Announc. 5(34). pii: e00848-17. [PudMed:28839029]
(43) Morgado SM, Marín MA, Freitas FS, Fonseca EL, Vicente ACP (2017). Complete plasmid sequence carrying type IV-like and type VII secretion systems from an atypical mycobacteria strain. Mem Inst Oswaldo Cruz. 112(7):514-516. [PudMed:28591314]
(44) Liu Y, Gao Y, Liu X, Liu Q, Zhang Y, Wang Q, Xiao J (2017). Transposon insertion sequencing reveals T4SS as the major genetic trait for conjugation transfer of multi-drug resistance pEIB202 from Edwardsiella. BMC Microbiol. 17(1):112. [PudMed:28499353]
(45) Harms A, Segers FH, Quebatte M, Mistl C, Manfredi P, Körner J, Chomel BB, Kosoy M, Maruyama S, Engel P, Dehio C (2017). Evolutionary Dynamics of Pathoadaptation Revealed by Three Independent Acquisitions of the VirB/D4 Type IV Secretion System in Bartonella. Genome Biol Evol. 9(3):761-776. [PudMed:28338931]
(46) Noroy C, Meyer DF (2017). Comparative Genomics of the Zoonotic Pathogen Ehrlichia chaffeensis Reveals Candidate Type IV Effectors and Putative Host Cell Targets. Front Cell Infect Microbiol. 6:204. [PudMed:28180111]
(47) Vishnu US, Sankarasubramanian J, Gunasekaran P, Rajendhran J (2017). Identification of OtpR regulated sRNAs in Brucella melitensis expressed under acidic stress and their roles in pathogenesis and metabolism. Comp Immunol Microbiol Infect Dis. 50:40-47. [PudMed:28131377]
(48) An Y, Wang J, Li C, Revote J, Zhang Y, Naderer T, Hayashida M, Akutsu T, Webb GI, Lithgow T, Song J (2017). SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems. Sci Rep. 7:41031. [PudMed:28112271]
(49) Peng Z, Liang W, Wang Y, Liu W, Zhang H, Yu T, Zhang A, Chen H, Wu B (2017). Experimental pathogenicity and complete genome characterization of a pig origin Pasteurella multocida serogroup F isolate HN07. Vet Microbiol. 198:23-33. [PudMed:28062004]
(50) Zhang W, Cheng Y, Du P, Zhang Y, Jia H, Li X, Wang J, Han N, Qiang Y, Chen C, Lu J (2017). Genomic study of the Type IVC secretion system in Clostridium difficile: understanding C. difficile evolution via horizontal gene transfer. Genome. 60(1):8-16. [PudMed:27922269]
(51) Nelson MS, Chun CL, Sadowsky MJ (2017). Type IV Effector Proteins Involved in the Medicago-Sinorhizobium Symbiosis. Mol Plant Microbe Interact. 30(1):28-34. [PudMed:27918247]
(52) Carlos C, Pereira LB, Ottoboni LMM (2017). Comparative genomics of Paracoccus sp. SM22M-07 isolated from coral mucus: insights into bacteria-host interactions. Curr Genet. 63(3):509-518. [PudMed:27796486]
(53) Sultanov RI, Arapidi GP, Vinogradova SV, Govorun VM, Luster DG, Ignatov AN (2016). Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants. BMC Genomics. 17(Suppl 14):1010. [PudMed:28105943]
(54) Machuca A, Martinez V (2016). Transcriptome Analysis of the Intracellular Facultative Pathogen Piscirickettsia salmonis: Expression of Putative Groups of Genes Associated with Virulence and Iron Metabolism. PLoS One. 11(12):e0168855. [PudMed:28033422]
(55) Bravo C, Martinez V (2016). Whole-genome comparative analysis of the pathogen Piscirickettsia salmonis. Vet Microbiol. 196:36-43. [PudMed:27939153]
(56) Chung HK, Tay A, Octavia S, Chen J, Liu F, Ma R, Lan R, Riordan SM, Grimm MC, Zhang L (2016). Genome analysis of Campylobacter concisus strains from patients with inflammatory bowel disease and gastroenteritis provides new insights into pathogenicity. Sci Rep. 6:38442. [PudMed:27910936]
(57) Wong EH, Ng CG, Chua EG, Tay AC, Peters F, Marshall BJ, Ho B, Goh KL, Vadivelu J, Loke MF (2016). Comparative Genomics Revealed Multiple Helicobacter pylori Genes Associated with Biofilm Formation In Vitro. PLoS One. 11(11):e0166835. [PudMed:27870886]
(58) Crovadore J, Calmin G, Chablais R, Cochard B, Schulz T, Lefort F (2016). Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1016, a Potential Symbiotic Biofertilizer for Agriculture. Genome Announc. 4(5). pii: e01095-16. [PudMed:27795259]
(59) Han N, Yu W, Qiang Y, Zhang W (2016). T4SP Database 2.0: An Improved Database for Type IV Secretion Systems in Bacterial Genomes with New Online Analysis Tools. Comput Math Methods Med. 2016:9415459. [PudMed:27738451]
(60) Zheng Q, Liu Y, Jeanthon C, Zhang R, Lin W, Yao J, Jiao N (2016). Geographic Impact on Genomic Divergence as Revealed by Comparison of Nine Citromicrobial Genomes. Appl Environ Microbiol. 82(24):7205-7216. [PudMed:27736788]
(61) Lind J, Backert S, Hoffmann R, Eichler J, Yamaoka Y, Perez-Perez GI, Torres J, Sticht H, Tegtmeyer N (2016). Systematic analysis of phosphotyrosine antibodies recognizing single phosphorylated EPIYA-motifs in CagA of East Asian-type Helicobacter pylori strains. BMC Microbiol. 16(1):201. [PudMed:27590005]
(62) Ramírez-Puebla ST, Ormeño-Orrillo E, Vera-Ponce de León A, Lozano L, Sanchez-Flores A, Rosenblueth M, Martínez-Romero E (2016). Genomes of Candidatus Wolbachia bourtzisii wDacA and Candidatus Wolbachia pipientis wDacB from the Cochineal Insect Dactylopius coccus (Hemiptera: Dactylopiidae). G3 (Bethesda). 6(10):3343-3349. [PudMed:27543297]
(63) Mhedbi-Hajri N, Yahiaoui N, Mondy S, Hue N, Pélissier F, Faure D, Dessaux Y (2016). Transcriptome analysis revealed that a quorum sensing system regulates the transfer of the pAt megaplasmid in Agrobacterium tumefaciens. BMC Genomics. 17:661. [PudMed:27543103]
(64) Ormeño-Orrillo E, Gomes DF, Del Cerro P, Vasconcelos AT, Canchaya C, Almeida LG, Mercante FM, Ollero FJ, Megías M, Hungria M (2016). Genome of Rhizobium leucaenae strains CFN 299(T) and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions. BMC Genomics. 17:534. [PudMed:27485828]
(65) Gillespie JJ, Phan IQ, Driscoll TP, Guillotte ML, Lehman SS, Rennoll-Bankert KE, Subramanian S, Beier-Sexton M, Myler PJ, Rahman MS, Azad AF (2016). The Rickettsia type IV secretion system: unrealized complexity mired by gene family expansion. Pathog Dis. 74(6). pii: ftw058. [PudMed:27307105]
(66) Zhu DT, Xia WQ, Rao Q, Liu SS, Ghanim M, Wang XW (2016). Sequencing and comparison of the Rickettsia genomes from the whitefly Bemisia tabaci Middle East Asia Minor I. Insect Sci. 23(4):531-42. [PudMed:27273750]
(67) Sankarasubramanian J, Vishnu US, Gunasekaran P, Rajendhran J (2016). A genome-wide SNP-based phylogenetic analysis distinguishes different biovars of Brucella suis. Infect Genet Evol. 41:213-217. [PudMed:27085292]
(68) Graaf-van Bloois Lv, Miller WG, Yee E, Gorkiewicz G, Forbes KJ, Zomer AL, Wagenaar JA, Duim B (2016). Campylobacter fetus Subspecies Contain Conserved Type IV Secretion Systems on Multiple Genomic Islands and Plasmids. PLoS One. 11(4):e0152832. [PudMed:27049518]
(69) Shi X, Lin Y, Qiu Y, Li Y, Jiang M, Chen Q, Jiang Y, Yuan J, Cao H, Hu Q, Huang S (2016). Comparative Screening of Digestion Tract Toxic Genes in Proteus mirabilis. PLoS One. 11(3):e0151873. [PudMed:27010388]
(70) Abby SS, Cury J, Guglielmini J, Néron B, Touchon M, Rocha EP (2016). Identification of protein secretion systems in bacterial genomes. Sci Rep. 6:23080. [PudMed:26979785]
(71) Huang J, Liang Y, Guo 1, Shang K, Ge L, Kashif J, Wang L (2016). Comparative Genomic Analysis of the ICESa2603 Family ICEs and Spread of erm(B)- and tet(O)-Carrying Transferable 89K-Subtype ICEs in Swine and Bovine Isolates in China. Front Microbiol. 7:55. [PudMed:26870017]
(72) Frank J, Dingemanse C, Schmitz AM, Vossen RH, van Ommen GJ, den Dunnen JT, Robanus-Maandag EC, Anvar SY (2016). The Complete Genome Sequence of the Murine Pathobiont Helicobacter typhlonius. Front Microbiol. 6:1549. [PudMed:26779178]
(73) Labra Á, Arredondo-Zelada O, Flores-Herrera P, Marshall SH, Gómez FA (2016). In sílico identification and characterization of putative Dot/Icm secreted virulence effectors in the fish pathogen Piscirickettsia salmonis. Microb Pathog. 92:11-18. [PudMed:26706346]
(74) Eichinger V, Nussbaumer T, Platzer A, Jehl MA, Arnold R, Rattei T (2016). EffectiveDB--updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems. Nucleic Acids Res. 44(D1):D669-74. [PudMed:26590402]
(75) Sankarasubramanian J, Vishnu US, Dinakaran V, Sridhar J, Gunasekaran P, Rajendhran J. (2016). Computational prediction of secretion systems and secretomes of Brucella: identification of novel type IV effectors and their interaction with the host. Mol Biosyst. 12(1):178-90. [PudMed:26575364]
(76) Baldridge GD, Li YG, Witthuhn BA, Higgins L, Markowski TW, Baldridge AS, Fallon AM (2016). Mosaic composition of ribA and wspB genes flanking the virB8-D4 operon in the Wolbachia supergroup B-strain, wStr. Arch Microbiol. 198(1):53-69. [PudMed:26400107]
(77) Scales BS, Erb-Downward JR, Huffnagle IM, LiPuma JJ, Huffnagle GB (2015). Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs. BMC Genomics. 16:1032. [PudMed:26644001]
(78) Mohammed M, Cormican M (2015). Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak. BMC Res Notes. 8:728. [PudMed:26613761]
(79) Abbott ZD, Flynn KJ, Byrne BG, Mukherjee S, Kearns DB, Swanson MS (2015). csrT Represents a New Class of csrA-Like Regulatory Genes Associated with Integrative Conjugative Elements of Legionella pneumophila. J Bacteriol. 198(3):553-64. [PudMed:26598366]
(80) de Bruijn I, Cheng X, de Jager V, Expósito RG, Watrous J, Patel N, Postma J, Dorrestein PC, Kobayashi D, Raaijmakers JM (2015). Comparative genomics and metabolic profiling of the genus Lysobacter. BMC Genomics. 16:991. [PudMed:26597042]
(81) Niu XN, Wei ZQ, Zou HF, Xie GG, Wu F, Li KJ, Jiang W, Tang JL, He YQ (2015). Complete sequence and detailed analysis of the first indigenous plasmid from Xanthomonas oryzae pv. oryzicola. BMC Microbiol. 15:233. [PudMed:26498126]
(82) Greninger AL, Kozyreva V, Truong CL, Longoria R, Chaturvedi V (2015). Draft Genome Sequence of Kerstersia gyiorum CG1, Isolated from a Leg Ulcer. Genome Announc. 3(5). pii: e01036-15. [PudMed:26358603]
(83) Liu W, Dong H, Li J, Ou Q, Lv Y, Wang X, Xiang Z, He Y, Wu Q (2015). RNA-seq reveals the critical role of OtpR in regulating Brucella melitensis metabolism and virulence under acidic stress. Sci Rep. 5:10864. [PudMed:26242322]
(84) Dhanani AS, Block G, Dewar K, Forgetta V, Topp E, Beiko RG, Diarra MS (2015). Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens. PLoS One. 10(6):e0128773. [PudMed:26083489]
(85) Soo RM, Woodcroft BJ, Parks DH, Tyson GW, Hugenholtz P (2015). Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus. PeerJ. 3:e968. [PudMed:26038723]
(86) Liu J, Wei F, Lu Y, Ma T, Zhao J, Gong X, Bao B (2015). Production level of tetrodotoxin in Aeromonas is associated with the copy number of a plasmid. Toxicon. 101:27-34. [PudMed:25911960]
(87) Martínez-García PM, Ramos C, Rodríguez-Palenzuela P (2015). T346Hunter: a novel web-based tool for the prediction of type III, type IV and type VI secretion systems in bacterial genomes. PLoS One. 10(4):e0119317. [PudMed:25867189]
(88) Okazaki S, Noisangiam R, Okubo T, Kaneko T, Oshima K, Hattori M, Teamtisong K, Songwattana P, Tittabutr P, Boonkerd N, Saeki K, Sato S, Uchiumi T, Minamisawa K, Teaumroong N (2015). Genome analysis of a novel Bradyrhizobium sp. DOA9 carrying a symbiotic plasmid. PLoS One. 10(2):e0117392. [PudMed:25710540]
(89) Sinclair SH, Garcia-Garcia JC, Dumler JS. (2015). Bioinformatic and mass spectrometry identification of Anaplasma phagocytophilum proteins translocated into host cell nuclei. Front Microbiol. 6:55. [PudMed:25705208]
(90) Zhang XS, Tegtmeyer N, Traube L, Jindal S, Perez-Perez G, Sticht H, Backert S, Blaser MJ (2015). A specific A/T polymorphism in Western tyrosine phosphorylation B-motifs regulates Helicobacter pylori CagA epithelial cell interactions. PLoS Pathog. 11(2):e1004621. [PudMed:25646814]
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