| Protein ID: 27378698 |
 SecReT6 ID | 39 |
| T6SS type | i3 |
| Gene symbol | clpB |
| Locus tag | bll3587 |
| Strain | Bradyrhizobium japonicum USDA 110 |
| Replicon | chromosome [GenBank: NC_004463] [Browse all T6SS(s) in this replicon] |
| Location [Strand] | 3962178..3964817 [-] |
| Product | ATP-dependent Clp protease ATP-binding subunit |
| Note | TssH |
| UniProt ID | Q89P96 |
| KEGG ID | bja:bll3587 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | AAA_2 [PF07724], Evalue: 4.30E-42, Aligned region: 231..249 AAA_2 [PF07724], Evalue: 4.30E-42, Aligned region: 611..777 AAA [PF00004], Evalue: 1.10E-19, Aligned region: 231..331 AAA [PF00004], Evalue: 1.10E-19, Aligned region: 617..735 ClpB_D2-small [PF10431], Evalue: 9.90E-17, Aligned region: 784..860 AAA_5 [PF07728], Evalue: 2.00E-13, Aligned region: 231..251 AAA_5 [PF07728], Evalue: 2.00E-13, Aligned region: 616..734 AAA_16 [PF13191], Evalue: 1.70E-12, Aligned region: 208..253 AAA_16 [PF13191], Evalue: 1.70E-12, Aligned region: 276..309 AAA_16 [PF13191], Evalue: 1.70E-12, Aligned region: 608..661 AAA_16 [PF13191], Evalue: 1.70E-12, Aligned region: 781..849 Sigma54_activat [PF00158], Evalue: 4.30E-08, Aligned region: 213..247 Sigma54_activat [PF00158], Evalue: 4.30E-08, Aligned region: 615..734 AAA_22 [PF13401], Evalue: 1.50E-07, Aligned region: 230..312 AAA_22 [PF13401], Evalue: 1.50E-07, Aligned region: 614..645 AAA_19 [PF13245], Evalue: 5.40E-06, Aligned region: 231..257 AAA_19 [PF13245], Evalue: 5.40E-06, Aligned region: 614..638 Zeta_toxin [PF06414], Evalue: 1.50E-05, Aligned region: 230..254 Zeta_toxin [PF06414], Evalue: 1.50E-05, Aligned region: 609..656 AAA_14 [PF13173], Evalue: 5.40E-05, Aligned region: 231..311 AAA_14 [PF13173], Evalue: 5.40E-05, Aligned region: 615..697 IstB_IS21 [PF01695], Evalue: 6.40E-05, Aligned region: 213..250 IstB_IS21 [PF01695], Evalue: 6.40E-05, Aligned region: 616..635 NACHT [PF05729], Evalue: 7.70E-05, Aligned region: 231..257 NACHT [PF05729], Evalue: 7.70E-05, Aligned region: 286..327 NACHT [PF05729], Evalue: 7.70E-05, Aligned region: 617..644 Arch_ATPase [PF01637], Evalue: 8.80E-05, Aligned region: 210..251 Arch_ATPase [PF01637], Evalue: 8.80E-05, Aligned region: 282..315 Arch_ATPase [PF01637], Evalue: 8.80E-05, Aligned region: 616..637 AAA_17 [PF13207], Evalue: 0.00022, Aligned region: 231..251 AAA_17 [PF13207], Evalue: 0.00022, Aligned region: 616..652 AAA_25 [PF13481], Evalue: 0.00035, Aligned region: 215..255 AAA_25 [PF13481], Evalue: 0.00035, Aligned region: 284..315 AAA_25 [PF13481], Evalue: 0.00035, Aligned region: 614..638 AAA_18 [PF13238], Evalue: 0.0008, Aligned region: 231..251 AAA_18 [PF13238], Evalue: 0.0008, Aligned region: 618..641 AAA_29 [PF13555], Evalue: 0.0016, Aligned region: 223..246 AAA_29 [PF13555], Evalue: 0.0016, Aligned region: 614..641 NTPase_1 [PF03266], Evalue: 0.005, Aligned region: 231..253 NTPase_1 [PF03266], Evalue: 0.005, Aligned region: 283..307 NTPase_1 [PF03266], Evalue: 0.005, Aligned region: 616..637 RNA_helicase [PF00910], Evalue: 0.0056, Aligned region: 232..252 RNA_helicase [PF00910], Evalue: 0.0056, Aligned region: 534..551 RNA_helicase [PF00910], Evalue: 0.0056, Aligned region: 617..638 RNA_helicase [PF00910], Evalue: 0.0056, Aligned region: 714..735 |
| Protein Sequence: 879 a.a. [Download] |
| >gi|27378698|ref|NP_770227.1| clpB gene product [Bradyrhizobium japonicum USDA 110] MTDISIEAVTGKLNRAGYDAFLQALRHAKSAGNRNVELAHWLFHILQQERNDLSLSVDHYKLDRARLLSD LAGVINGFRKNETDMPGVANSVIDLLDRGWHYATLFFGETQIRTGHLLVAGLKSNDIRRTLNNLSQEFSK VNVDALAAERRAVWAGSDEETMRPMDGSGLVGAVTEGAAQAGPKGTTPLDRFSQDLTAKAKSGEMDPILG RDEEIRQLIDVLMRRRQNNPILTGEAGVGKTAVVEGFAQRIAAGDVPPPLRGVRLCALDIGLMQAGASMK GEFEQRLRSVIDEVQSSPTPIILFIDEAHTLIGAGGAAGTGDAANLLKPPLARGTLRTIAATTWAEYRQY IEKDPALTRRFQPIQIDEPDVETCCIMLRGLLGPMEKHHGVRISDAAIVAAVNLSHRYIPSRQLPDKAVS LLDTASARVAISQSATPALIEDARVAIAAREAERSALVSDSDLGIEDDERIVAIDNDVAALKDKLTNLEA DWAAEQELVKDIRGIREILSEPMEGDDPAARRAELRGKFDTLESINPEKRMVYAYVDQQSVASVVSDWTG IPVGRMMRDEIETVLKLPEILNRRVVGQSHGLTMIAKRIETSRAKLDNPSKPIGVFMLAGPSGVGKTETA LALAETLYGGEQNMITINMSEFQEAHTVSTLKGAPPGYVGYGEGGRLTEAVRRKPYSVILLDEVEKAHPD VHEIFFQVFDKGTMEDGNGRRIDFKNTLIILTTNVGTDLIMGLSRDPKYRSEPEELAKMLRPELLKVFPA ALLGRIVSIPYFPLSDEMLAGIARLQLDRIGRRLRDNHNAAFSYDDAVVEHIVSRCNDPDSGGRMIDNII TNTLLPELSREFLSKSLAKEEVKQARVSIENDKFAYSWN |
| Nucleotide Sequence: 2640 bp [Download] |
| >gi|27375111|ref|NC_004463.1|:c3964817-3962178 Bradyrhizobium japonicum USDA 110 chromosome, complete genome GTGACCGACATCAGCATTGAAGCTGTAACGGGCAAGCTGAACCGGGCCGGCTATGATGCCTTCTTACAGG CCCTGCGCCACGCAAAGAGCGCCGGCAATCGCAACGTCGAGCTTGCGCACTGGCTGTTTCATATCCTGCA GCAGGAACGCAACGATCTCAGCCTCTCGGTCGATCATTACAAGCTCGACCGCGCACGCTTGTTGTCGGAC CTTGCCGGCGTGATCAATGGCTTTCGTAAGAACGAAACCGACATGCCGGGCGTCGCCAATTCGGTCATCG ATCTGCTCGATCGGGGCTGGCATTATGCCACGCTCTTCTTTGGCGAGACCCAGATCCGCACCGGTCATCT GCTTGTGGCAGGCCTGAAATCGAACGATATTCGTCGCACGCTGAACAACCTCTCGCAGGAATTTTCCAAG GTCAACGTCGACGCACTGGCCGCGGAGCGTCGCGCCGTCTGGGCCGGCTCCGACGAGGAGACCATGCGAC CGATGGACGGTTCGGGCCTGGTCGGCGCCGTCACGGAAGGCGCGGCCCAAGCGGGTCCAAAGGGGACGAC GCCGCTCGACCGGTTCTCCCAGGATCTCACCGCCAAGGCCAAATCGGGCGAGATGGATCCGATCCTTGGT CGGGACGAAGAAATCCGCCAACTGATCGACGTGTTGATGCGTCGGCGGCAGAACAATCCAATCCTCACCG GCGAGGCTGGCGTCGGCAAGACCGCAGTTGTCGAGGGCTTCGCCCAGCGTATCGCCGCCGGCGACGTGCC GCCACCGCTCCGCGGTGTAAGGCTTTGTGCGCTCGACATCGGCCTGATGCAGGCCGGTGCCTCCATGAAG GGCGAGTTTGAGCAGCGCTTGCGGTCGGTGATCGACGAGGTCCAGAGCTCACCCACCCCCATCATCCTGT TCATCGATGAAGCCCACACACTGATCGGCGCCGGCGGCGCGGCCGGCACCGGTGATGCAGCCAATCTCCT GAAACCTCCCCTTGCGCGTGGCACGCTGCGCACGATCGCCGCCACCACGTGGGCAGAATATCGCCAGTAT ATCGAGAAAGATCCCGCGCTCACACGACGCTTCCAGCCGATCCAGATCGATGAACCCGATGTGGAAACCT GCTGCATCATGCTGCGCGGACTCCTCGGTCCGATGGAAAAGCACCACGGCGTTCGCATCTCGGATGCCGC GATCGTCGCAGCGGTCAACCTGTCCCACCGCTACATTCCTTCACGGCAGTTACCCGACAAGGCGGTCAGC CTGCTTGATACCGCCTCGGCGCGCGTGGCGATCAGCCAGAGCGCGACTCCGGCCCTGATCGAGGATGCAC GCGTTGCGATTGCCGCCCGTGAAGCTGAGCGATCAGCACTCGTCAGCGACAGCGATCTTGGGATTGAGGA CGACGAGCGCATCGTAGCGATCGACAACGACGTCGCAGCATTGAAGGACAAGCTGACGAACCTCGAAGCC GATTGGGCCGCAGAGCAGGAGCTCGTCAAGGACATCCGGGGCATTCGGGAGATCCTGTCCGAACCCATGG AAGGCGACGATCCGGCTGCCAGGCGCGCGGAGCTGCGCGGCAAGTTCGACACGCTTGAGAGCATCAATCC GGAAAAGCGGATGGTCTATGCCTATGTGGACCAGCAGTCGGTGGCGTCCGTTGTCTCTGACTGGACTGGC ATCCCGGTCGGCCGGATGATGCGCGACGAGATCGAAACCGTGCTGAAACTACCGGAGATCCTCAACCGCC GCGTCGTCGGCCAGTCTCATGGGCTGACGATGATCGCCAAGCGAATCGAGACCAGCCGCGCCAAACTGGA CAACCCGTCGAAGCCGATCGGCGTGTTCATGCTGGCTGGTCCATCCGGCGTGGGCAAGACCGAAACCGCC CTGGCGCTTGCCGAGACCCTCTACGGCGGCGAGCAGAACATGATCACGATCAACATGTCGGAGTTCCAGG AAGCGCACACCGTCTCGACCTTGAAGGGAGCGCCTCCCGGCTATGTCGGCTATGGAGAAGGTGGACGCCT CACCGAGGCTGTCCGGCGCAAGCCCTATAGCGTCATCCTGCTCGACGAGGTCGAGAAAGCTCATCCCGAC GTCCATGAGATCTTCTTCCAGGTGTTCGACAAGGGAACCATGGAGGACGGCAACGGGCGGCGGATCGACT TCAAGAACACGTTGATCATCCTGACCACCAACGTCGGCACCGATCTGATCATGGGCCTCTCGCGAGATCC AAAGTATCGCAGCGAACCGGAAGAGCTCGCCAAGATGCTGAGGCCGGAATTGCTGAAGGTGTTTCCGGCA GCGCTGCTCGGACGCATCGTCTCGATACCGTACTTCCCGCTATCCGACGAAATGCTCGCCGGGATCGCTC GGTTGCAGCTCGACCGGATCGGACGACGCCTCCGTGACAACCATAACGCGGCATTCAGCTACGATGACGC GGTCGTGGAGCACATTGTGTCACGTTGCAACGACCCGGACTCTGGCGGGCGAATGATTGACAACATCATC ACCAACACCCTGCTCCCGGAGCTGTCACGCGAATTCCTCAGCAAGTCGCTTGCCAAGGAAGAAGTCAAGC AAGCGCGGGTCTCGATCGAGAACGACAAGTTCGCATATTCGTGGAATTGA |