| Protein ID: 300313318 |
 SecReT6 ID | 406 |
| T6SS type | i4b |
| Gene symbol | clpB |
| Locus tag | Hsero_4031 |
| Strain | Herbaspirillum seropedicae SmR1 |
| Replicon | chromosome [GenBank: NC_014323] [Browse all T6SS(s) in this replicon] |
| Location [Strand] | 4626207..4628876 [-] |
| Product | ClpA/B-type chaperone ATPase |
| Note | TssH |
| UniProt ID | D8IST6 |
| KEGG ID | hse:Hsero_4031 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | AAA_2 [PF07724], Evalue: 2.60E-43, Aligned region: 234..274 AAA_2 [PF07724], Evalue: 2.60E-43, Aligned region: 618..787 AAA [PF00004], Evalue: 6.00E-19, Aligned region: 234..346 AAA [PF00004], Evalue: 6.00E-19, Aligned region: 624..742 AAA_5 [PF07728], Evalue: 6.60E-14, Aligned region: 234..257 AAA_5 [PF07728], Evalue: 6.60E-14, Aligned region: 623..744 ClpB_D2-small [PF10431], Evalue: 2.80E-11, Aligned region: 797..868 Clp_N [PF02861], Evalue: 2.30E-10, Aligned region: 23..74 Clp_N [PF02861], Evalue: 2.30E-10, Aligned region: 111..125 Clp_N [PF02861], Evalue: 2.30E-10, Aligned region: 521..536 AAA_16 [PF13191], Evalue: 1.30E-09, Aligned region: 211..256 AAA_16 [PF13191], Evalue: 1.30E-09, Aligned region: 278..317 AAA_16 [PF13191], Evalue: 1.30E-09, Aligned region: 420..501 AAA_16 [PF13191], Evalue: 1.30E-09, Aligned region: 618..664 AAA_16 [PF13191], Evalue: 1.30E-09, Aligned region: 689..712 AAA_22 [PF13401], Evalue: 5.10E-07, Aligned region: 233..320 AAA_22 [PF13401], Evalue: 5.10E-07, Aligned region: 425..480 AAA_22 [PF13401], Evalue: 5.10E-07, Aligned region: 620..644 AAA_22 [PF13401], Evalue: 5.10E-07, Aligned region: 685..717 Sigma54_activat [PF00158], Evalue: 3.90E-06, Aligned region: 228..314 Sigma54_activat [PF00158], Evalue: 3.90E-06, Aligned region: 623..748 AAA_29 [PF13555], Evalue: 3.30E-05, Aligned region: 225..250 AAA_29 [PF13555], Evalue: 3.30E-05, Aligned region: 619..648 AAA_17 [PF13207], Evalue: 3.40E-05, Aligned region: 234..281 AAA_17 [PF13207], Evalue: 3.40E-05, Aligned region: 623..659 AAA_25 [PF13481], Evalue: 3.80E-05, Aligned region: 234..258 AAA_25 [PF13481], Evalue: 3.80E-05, Aligned region: 496..512 AAA_25 [PF13481], Evalue: 3.80E-05, Aligned region: 619..645 IstB_IS21 [PF01695], Evalue: 0.00011, Aligned region: 228..255 IstB_IS21 [PF01695], Evalue: 0.00011, Aligned region: 623..641 AAA_19 [PF13245], Evalue: 0.00018, Aligned region: 232..256 AAA_19 [PF13245], Evalue: 0.00018, Aligned region: 621..645 NACHT [PF05729], Evalue: 0.00025, Aligned region: 234..261 NACHT [PF05729], Evalue: 0.00025, Aligned region: 624..643 AAA_23 [PF13476], Evalue: 0.00065, Aligned region: 234..251 AAA_23 [PF13476], Evalue: 0.00065, Aligned region: 480..512 AAA_23 [PF13476], Evalue: 0.00065, Aligned region: 620..731 Arch_ATPase [PF01637], Evalue: 0.0035, Aligned region: 285..316 Arch_ATPase [PF01637], Evalue: 0.0035, Aligned region: 622..664 Arch_ATPase [PF01637], Evalue: 0.0035, Aligned region: 694..718 RNA_helicase [PF00910], Evalue: 0.0037, Aligned region: 235..255 RNA_helicase [PF00910], Evalue: 0.0037, Aligned region: 624..645 RNA_helicase [PF00910], Evalue: 0.0037, Aligned region: 721..742 Zeta_toxin [PF06414], Evalue: 0.004, Aligned region: 234..256 Zeta_toxin [PF06414], Evalue: 0.004, Aligned region: 617..663 AAA_30 [PF13604], Evalue: 0.0044, Aligned region: 219..256 AAA_30 [PF13604], Evalue: 0.0044, Aligned region: 619..653 AAA_18 [PF13238], Evalue: 0.0066, Aligned region: 234..254 AAA_18 [PF13238], Evalue: 0.0066, Aligned region: 625..644 SRP54 [PF00448], Evalue: 0.0084, Aligned region: 234..255 SRP54 [PF00448], Evalue: 0.0084, Aligned region: 622..654 |
| Protein Sequence: 889 a.a. [Download] |
| >gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [Herbaspirillum seropedicae SmR1] MGINLRSLICKLNETARLATERAATLCVSCSHYEVDLEHLFLALLEQPQSDFSLIARRSGIDTDGLQADL EHEISTFREGNARTPVLSPHLRTLFENGWLIASLEESNPSVRSAHLLLALLTQSDLSQLAYRGSKLFAKF KIDEIKHNLHRLTEGSVESAAIGKTGQGGDRESGGDPMGELKQLRIGKMTALDQYTTQLTQRARDGKIDP VIGRDAEIRQAVDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAQGDVPKPLQGVEIHTLDMGLLQAGA SVKGEFESRLKTVIDEVKKSAYPIILFIDEAHTMIGAAGQAGQSDAANLLKPALARGELRTIAATTWSEY KKYFEKDAALARRFQVIKVEEPGEDVACAMLRAMVPLMEQHFGVRVYDEAVVEAVRLSHRYISGRQLPDK AISVLDTACAKVALGRDATPALLEGVTRRLERLDTEISALRREAASGSQHEERLASLLDQHVCAVAERHD LQLRWEQERELNERIQQARATLENPGTGDARGGNVDAARAELKQLLDELRQRQGDAPMVPIQVDGHVVAE IVAAWTGIPLGKMVKDEIQTVLDLDALLQERVLGQPQATSAVAQRVRTSRANLDDPGKPKGVFLFVGPSG VGKTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDE VEKAHADVLELFFQVFDKGVMDDAEGREIDFKNTIIILTSNVASAQMMQACLNKSQEELPTPEELDTLIR PQLIKTFKPAFLGRLKVVPYYPIADVVLVEIIKLKLARIAKRVAENHRVEFSYDKALVEAVLGRCTEVDS GARNVDNILSGTLLPAVAESVLVRMAEGVEIRRIKVSASKKGDFKYTIQ |
| Nucleotide Sequence: 2670 bp [Download] |
| >gi|300309346|ref|NC_014323.1|:c4628876-4626207 Herbaspirillum seropedicae SmR1 chromosome, complete genome ATGGGAATCAATCTCAGATCATTAATTTGCAAACTCAATGAGACCGCACGCCTGGCTACCGAACGCGCCG CCACGCTGTGCGTGTCATGTAGCCATTATGAAGTGGACCTGGAGCATCTCTTTCTGGCCTTGCTTGAGCA ACCGCAGTCAGACTTCAGCCTGATCGCGCGCCGAAGCGGCATCGATACCGATGGCCTGCAAGCCGATCTG GAGCACGAGATCTCGACCTTCAGAGAGGGCAATGCGCGTACTCCTGTCCTGTCTCCGCACCTGCGCACGT TGTTCGAGAACGGATGGCTCATTGCCTCGCTGGAGGAAAGTAATCCTTCCGTTCGCAGTGCGCACTTGTT GCTGGCGCTGCTGACTCAAAGCGATTTGTCGCAGCTTGCGTATCGTGGATCGAAGCTATTTGCCAAATTC AAGATCGATGAAATCAAGCACAATTTGCACAGGCTTACCGAAGGATCCGTGGAGTCGGCTGCAATCGGCA AGACAGGTCAGGGCGGCGACAGGGAGAGTGGTGGCGACCCGATGGGCGAACTCAAGCAGCTTCGCATCGG CAAGATGACTGCGCTGGATCAGTACACTACGCAGCTAACGCAACGTGCCCGCGATGGCAAGATAGATCCG GTCATTGGCCGCGATGCTGAGATCCGGCAGGCAGTCGATATTCTGCTCCGCCGTCGGCAAAACAATCCGA TCCTGACCGGCGAGGCTGGCGTGGGAAAGACCGCCGTGGTGGAGGGGCTGGCCCTGCGTATCGCCCAGGG CGATGTGCCGAAGCCCTTGCAGGGAGTTGAGATCCATACCCTGGACATGGGCCTGCTGCAGGCGGGGGCT AGCGTCAAGGGTGAGTTTGAGAGTCGCCTCAAAACCGTGATCGATGAGGTCAAGAAGAGCGCATATCCCA TCATTCTCTTCATCGATGAGGCGCACACCATGATTGGCGCCGCTGGCCAGGCCGGCCAGAGCGATGCAGC CAACCTGCTCAAGCCGGCCCTGGCGCGGGGCGAGCTACGCACGATCGCGGCAACCACCTGGAGCGAATAC AAGAAATATTTCGAAAAAGATGCCGCGCTGGCCCGACGGTTCCAGGTCATCAAGGTAGAAGAGCCGGGCG AGGATGTGGCCTGCGCGATGCTACGTGCCATGGTGCCTCTCATGGAGCAGCATTTCGGAGTGCGCGTCTA TGATGAAGCCGTCGTCGAAGCCGTCAGGCTTTCGCACCGCTATATCAGCGGACGTCAGCTGCCCGACAAG GCCATTAGTGTGCTCGACACGGCCTGCGCCAAGGTGGCGCTCGGGCGGGATGCCACTCCCGCACTACTGG AAGGTGTCACCCGACGCCTTGAGCGCCTGGATACGGAGATTTCGGCGCTCAGGCGTGAGGCTGCCAGCGG TTCGCAGCATGAGGAGCGACTGGCGTCGCTGCTGGATCAGCATGTTTGTGCTGTAGCCGAACGGCATGAT TTGCAGTTGCGCTGGGAGCAGGAGCGTGAACTCAACGAACGCATCCAGCAAGCTCGTGCCACTCTGGAAA ATCCCGGTACGGGAGACGCCCGAGGCGGTAACGTGGACGCCGCTCGGGCGGAGCTGAAGCAGTTGTTGGA TGAGCTCAGGCAACGCCAGGGTGACGCGCCGATGGTGCCGATCCAGGTGGATGGGCATGTGGTTGCCGAG ATCGTGGCCGCGTGGACCGGAATCCCATTGGGTAAGATGGTCAAGGACGAAATCCAGACGGTGCTGGATC TGGACGCATTGCTGCAAGAGCGTGTTCTAGGGCAGCCGCAGGCTACTTCAGCCGTGGCGCAGCGTGTACG AACATCTCGGGCCAATCTGGATGATCCCGGCAAGCCCAAGGGCGTATTCCTGTTTGTGGGGCCGTCTGGG GTAGGCAAGACCGAGACAGCGTTGGCGCTGGCTGATGTGCTCTACGGTGGCGAACGCAAGTTAATCACCA TTAACATGAGCGAATACCAGGAAGCCCATACGGTCTCTGGCCTGAAGGGTTCGCCGCCCGGCTATGTCGG CTATGGTGAAGGCGGTGTGCTGACCGAGGCCGTACGCCGCAATCCCTACAGTGTGGTGCTGCTCGACGAG GTCGAGAAGGCCCACGCGGATGTCCTGGAGCTATTCTTCCAGGTCTTCGACAAGGGAGTGATGGATGATG CCGAAGGACGCGAGATTGATTTCAAGAACACCATCATCATCCTCACCAGCAATGTGGCTTCCGCGCAGAT GATGCAGGCTTGCTTGAACAAGAGCCAGGAAGAATTGCCTACCCCTGAAGAACTTGACACTCTGATTCGA CCACAGCTGATCAAGACCTTCAAGCCGGCATTTCTCGGGCGCTTGAAGGTCGTTCCCTATTACCCGATTG CCGACGTCGTGCTGGTCGAGATCATCAAGCTCAAGCTAGCGCGTATTGCCAAGCGTGTTGCCGAGAATCA TAGGGTCGAGTTCAGCTACGACAAGGCGCTCGTCGAGGCTGTGCTGGGGCGTTGCACCGAGGTGGACTCG GGCGCACGCAATGTTGACAACATCCTTAGCGGAACTCTTTTGCCTGCGGTTGCCGAAAGTGTGCTGGTGC GCATGGCCGAAGGTGTGGAGATTCGCCGTATTAAGGTATCGGCCAGCAAGAAAGGTGATTTCAAGTACAC CATCCAATAG |