| Protein ID: 319791245 |
 SecReT6 ID | 417 |
| T6SS type | i3 |
| Gene symbol | - |
| Locus tag | Varpa_0553 |
| Strain | Variovorax paradoxus EPS |
| Replicon | chromosome [GenBank: NC_014931] [Browse all T6SS(s) in this replicon] |
| Location [Strand] | 610673..614272 [+] |
| Product | type VI secretion protein icmf |
| Note | TssM |
| UniProt ID | E6V5G8 |
| KEGG ID | vpe:Varpa_0553 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | ImcF-related_N [PF14331], Evalue: 1.90E-96, Aligned region: 206..472 ImcF-related_N [PF14331], Evalue: 1.90E-96, Aligned region: 524..585 IcmF-related [PF06761], Evalue: 5.10E-88, Aligned region: 521..832 DUF1215 [PF06744], Evalue: 1.90E-32, Aligned region: 937..1058 |
| Protein Sequence: 1199 a.a. [Download] |
| >gi|319791245|ref|YP_004152885.1| type VI secretion protein icmf [Variovorax paradoxus EPS] MIKKIFGFLFSPLLLTLLALIVVGLLIWWIGPLVKIGSLAPLESELARWLLIGAIVLIVVLRMAWRRWRA RRASQHLTDGLMKAPTVKTDAPANGEQKILDTRFSEAVATLKQMRLHAAGKKPGWRDWMSISGGSYLYDL PWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSHQTE DKNAWEGFLGLLKKARPRRPLNGVFLTVSVADLLSQGPEQRTQLAASIRARLLELDSKLTTRLPVYVLVT KSDLLYGFTDYFDDLGKEQRAQVFGFTLPADENVQTEEKGLSTAFHREFALLHNRVNDGLIPRMQRETDG GRRAAIFGFPAQFGSIGSLLSDLLDQVFTGSRFAQPPWVRGVYFTSGTQEGSPIDRVMGSLSRSFGIERA MLAPQKSSGRSYFLTSLLRDVVFPEQRLAGADVKLERRRHLLRMTGVAAMTLVTVGLIAGWGYSTWQNTN YLKSVEARAVPAQKSLANLPVQLQNLVEVAPVMQGIRDIWKTPENRQGDEPLSMTLGLYQGNKLDAAARL AHQRALNDVFLPQIAKRIEDQLRTAQKDNLEYTYEALKSYLMLYQPEHFDPEALKAWITLDWARSLDRGI PEEQRMALEEQLDVLIAQGPPRSPLKMDENLVRSVRAVLASYPLEQRVFSRLKRQRATKDIPGFSVATAA GPSAPLVFERISGKPLTEGVPGMFTYDGYHKRFQNEVTVLTGLLAAEDPWVLGQDKGAADRLRDVAALGA LTDRVRRLYLAEYVKQWEALLGDVRLIRATGLDKNIEAARILSGVSSPLANFLRAVVKETTLIPADQPKD VVSKATATVASTRKGLEDLFGGDPNKPVATGKRIESIVDDRFEPLRRLVTAAAPGQPAPIDDALKLFNEV YVYLNAVDTAVKGRTSPPPGDVAGKLKADAGRLPEPVRSMVENLSQSGAAQAQVAERGNLSQDLRPVTEF CARAIAGRYPFSPTSKRDVLPEDFGQMFGAGGLMDDFFQKRLAALVDTSTRPWRYKPVAERGAITTQALA QFERAARIKDIFFRAGGRGPSMRLDFKPVEMDAGITQFILDVDGQLVKYAHGPVVPMAVQWPGPKGSNQV RIQVSPPSTTGSSGSAVDGPWALFRALDDGQLEAGDAPEKFFITFQIGARKTRFEVTTNSVQHPIRLREL REFSCPEGL |
| Nucleotide Sequence: 3600 bp [Download] |
| >gi|319790694|ref|NC_014931.1|:610673-614272 Variovorax paradoxus EPS chromosome, complete genome ATGATCAAGAAAATCTTCGGCTTCCTGTTCAGTCCGCTGCTGCTGACGCTGCTCGCGCTCATCGTCGTCG GGCTCCTGATCTGGTGGATCGGACCGCTGGTGAAGATCGGTTCGCTCGCCCCGCTCGAAAGCGAGTTGGC GCGCTGGCTGCTGATCGGCGCCATCGTGCTCATCGTCGTGCTGCGCATGGCGTGGCGGCGCTGGCGCGCG CGCCGTGCGAGCCAGCACCTGACCGATGGCCTCATGAAAGCGCCGACGGTGAAGACCGACGCACCGGCCA ATGGCGAGCAGAAGATTCTCGATACGCGCTTCAGCGAAGCCGTCGCCACCTTGAAGCAGATGCGCCTGCA CGCCGCCGGCAAGAAGCCGGGCTGGCGCGACTGGATGTCCATCTCGGGCGGCAGCTATCTGTATGACCTG CCTTGGTACGTCTTCATCGGCGCGCCCGGTGCTGGCAAGACGACGGCACTCGTGAACTCGGGCCTGTCGT TCCCGCTCGCCGAGAAGTTCGGCCCCGGCGCGATCCGCGGTGTGGGCGGCACGCGCAACTGCGACTGGTG GTTCACCGACGAGGCGGTGCTCATCGACACCGCCGGCCGCTACACCACGCAGGACAGCCACCAGACCGAG GACAAGAACGCATGGGAAGGCTTCCTCGGCCTGCTCAAGAAAGCGCGCCCGCGCCGTCCGCTGAACGGCG TGTTCCTCACGGTGAGCGTCGCCGACTTGTTGAGCCAAGGGCCCGAGCAGCGCACGCAACTCGCCGCATC GATCCGCGCGCGTTTGCTCGAACTCGACAGCAAGCTCACGACCCGCCTGCCGGTGTATGTGCTCGTCACC AAGAGCGACCTGCTCTACGGCTTCACCGATTACTTCGACGACCTCGGCAAGGAGCAGCGCGCGCAGGTCT TCGGCTTCACGCTGCCGGCCGACGAGAACGTGCAGACCGAAGAGAAGGGCCTCTCCACCGCCTTCCATCG CGAGTTCGCGCTGCTGCACAACCGCGTGAACGACGGCCTCATTCCGCGCATGCAGCGCGAGACCGACGGT GGGCGCCGCGCGGCGATCTTCGGTTTCCCGGCGCAGTTCGGCTCCATCGGCTCGCTGCTGTCGGACCTGC TCGACCAGGTGTTCACCGGCTCGCGCTTCGCGCAGCCGCCGTGGGTGCGAGGCGTGTACTTCACCAGCGG CACGCAGGAGGGCAGCCCGATCGACCGCGTGATGGGCAGCCTGTCGCGCAGCTTCGGCATCGAGCGCGCG ATGCTCGCGCCGCAGAAGTCGAGCGGCCGCAGCTACTTCCTCACATCGCTGCTGCGCGACGTGGTGTTTC CCGAGCAGCGCCTCGCAGGCGCCGACGTGAAGCTGGAGCGCCGCCGCCATCTGCTGCGCATGACGGGCGT GGCCGCGATGACGCTGGTCACGGTCGGCCTCATCGCGGGCTGGGGCTACAGCACCTGGCAGAACACGAAC TACCTGAAGTCGGTGGAAGCGCGCGCCGTGCCCGCGCAGAAGAGCCTGGCCAATCTTCCGGTGCAACTGC AGAACCTGGTCGAGGTCGCGCCCGTGATGCAGGGCATACGCGACATCTGGAAGACACCCGAGAACCGCCA GGGCGATGAGCCGCTCAGCATGACGCTGGGCCTCTACCAGGGCAACAAGCTCGACGCCGCCGCGCGCCTT GCGCACCAGCGCGCGCTCAACGACGTGTTCCTGCCGCAGATCGCCAAGCGCATCGAGGACCAGCTGCGCA CCGCGCAGAAGGACAACCTGGAGTACACGTACGAAGCGCTCAAGAGCTATTTGATGCTCTACCAGCCCGA GCACTTCGACCCCGAGGCGCTGAAGGCCTGGATCACGCTCGACTGGGCGCGCAGCCTGGACCGCGGCATT CCCGAAGAGCAGCGCATGGCGCTCGAAGAGCAGCTCGACGTGCTCATCGCCCAAGGCCCGCCGCGCTCGC CGCTCAAGATGGACGAGAACCTCGTGCGCAGCGTGCGCGCCGTGCTCGCGAGCTATCCGCTGGAACAGCG CGTGTTCAGCCGCCTGAAGCGCCAGCGCGCGACCAAGGACATTCCGGGCTTCAGCGTGGCGACGGCCGCC GGCCCCTCGGCGCCGCTCGTGTTCGAGCGCATCAGCGGCAAGCCGCTGACCGAAGGCGTGCCGGGCATGT TCACCTACGACGGCTATCACAAGCGCTTCCAGAACGAAGTGACGGTGCTCACCGGCCTGCTCGCCGCCGA AGACCCGTGGGTGCTCGGACAGGACAAGGGCGCCGCCGACCGCCTGCGCGACGTGGCCGCGCTCGGCGCG CTGACCGACCGCGTGCGCCGCCTGTACCTCGCCGAGTACGTGAAGCAATGGGAAGCGCTGCTCGGCGATG TGCGGCTGATTCGCGCCACGGGTCTCGACAAGAACATCGAGGCCGCGCGCATTCTCTCGGGCGTGAGCTC GCCGCTCGCGAACTTCCTGCGCGCCGTGGTGAAGGAGACCACGCTGATCCCCGCCGATCAACCGAAGGAC GTGGTGAGCAAGGCCACCGCCACCGTCGCCAGCACCCGCAAGGGCCTGGAAGACCTGTTCGGCGGCGACC CCAACAAGCCGGTCGCGACCGGCAAGCGCATCGAGAGCATCGTGGACGACCGCTTCGAGCCGCTGCGCCG CCTGGTCACCGCCGCGGCGCCCGGCCAGCCCGCGCCGATCGACGATGCATTGAAGCTCTTCAACGAGGTG TACGTGTACCTCAACGCGGTCGACACGGCAGTGAAGGGCCGCACCTCGCCGCCGCCCGGCGATGTGGCCG GCAAGCTCAAGGCCGATGCCGGCCGGCTGCCCGAGCCGGTGCGCTCGATGGTCGAGAACCTGAGCCAGTC GGGCGCCGCGCAGGCGCAGGTGGCCGAGCGCGGCAACCTGAGCCAGGACCTGCGCCCCGTGACCGAGTTC TGCGCGCGTGCCATCGCGGGCCGCTATCCGTTCTCGCCCACCAGCAAGCGCGATGTGCTGCCCGAGGACT TCGGCCAGATGTTCGGCGCCGGTGGCCTGATGGACGACTTCTTCCAGAAGCGGCTGGCTGCATTGGTCGA TACGAGCACGCGGCCGTGGCGCTACAAGCCCGTGGCCGAGCGCGGCGCGATCACCACGCAGGCGCTCGCG CAGTTCGAGCGTGCCGCGCGCATCAAGGACATCTTCTTCCGCGCGGGTGGCCGCGGGCCTTCGATGCGGC TGGATTTCAAGCCGGTGGAGATGGATGCGGGCATCACGCAGTTCATCCTCGATGTCGATGGGCAGCTCGT GAAGTACGCGCATGGCCCCGTGGTGCCGATGGCGGTGCAGTGGCCGGGGCCGAAGGGCAGCAACCAGGTG CGCATCCAGGTGAGTCCGCCTTCGACGACCGGCAGTTCGGGCTCGGCGGTCGATGGGCCGTGGGCGCTGT TCCGTGCGCTGGACGATGGACAGCTCGAAGCCGGTGATGCGCCGGAGAAGTTCTTCATCACCTTCCAGAT CGGCGCGCGCAAGACGCGTTTCGAGGTGACGACGAACAGCGTGCAGCATCCGATTCGCTTGCGTGAGCTG CGGGAGTTTTCTTGTCCGGAGGGGTTGTGA |
| Protein ID: 319791281 |
| SecReT6 ID | 417 |
| T6SS type | i3 |
| Gene symbol | - |
| Locus tag | Varpa_0589 |
| Strain | Variovorax paradoxus EPS |
| Replicon | chromosome [GenBank: NC_014931] [Browse all T6SS(s) in this replicon] |
| Location [Strand] | 656848..657987 [-] |
| Product | hypothetical protein |
| Note | TssM |
| UniProt ID | E6V6E7 |
| KEGG ID | vpe:Varpa_0589 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | ImcF-related_N [PF14331], Evalue: 7.00E-33, Aligned region: 56..77 ImcF-related_N [PF14331], Evalue: 7.00E-33, Aligned region: 154..357 |
| Protein Sequence: 379 a.a. [Download] |
| >gi|319791281|ref|YP_004152921.1| hypothetical protein Varpa_0589 [Variovorax paradoxus EPS] MTALLSSPTHFFWMLLALCLLGFGLLCAMVHDAGRGARRRALLRRIETLDAPTDEAAVGALRESMAEARQ ALRQQAPRPARSSHDPAAPVPWFLFIGDAAADLPGLLATAQGKRLARPDSAPDDGACWRWWLTGALTAIE VQPAAVGEAAGAPRTRALWLQALLALAERRDRLPLNGVVACFSASELLQADADSLRPLAAKMRRLIDEAG DTLRLQLPMYLVITGLEHLTGYAALRGALPPEVLAQALGHRLPDPFAAPSATAGDRLDTLFDPIAAQLQS LRMALMREQHGAAARLSIHGFVEAVQGLQPALREVAEVLFESHGKGSRAPRWRGLYFTAAASDATGGAFV TDLFERFLPADQPLVRPGRPSSNTAAGAP |
| Nucleotide Sequence: 1140 bp [Download] |
| >gi|319790694|ref|NC_014931.1|:c657987-656848 Variovorax paradoxus EPS chromosome, complete genome ATGACCGCGCTGCTCTCCTCGCCCACGCACTTCTTCTGGATGCTGCTCGCGCTGTGCCTGCTGGGCTTCG GGCTGCTGTGCGCGATGGTGCACGACGCGGGCCGCGGTGCGCGGCGGCGTGCCTTGCTGCGCCGCATCGA GACGCTCGATGCGCCCACGGACGAGGCGGCCGTCGGGGCGCTGCGGGAATCGATGGCAGAGGCGCGTCAG GCGCTGCGGCAGCAGGCGCCGCGGCCCGCACGGTCGTCGCACGACCCGGCTGCGCCGGTGCCGTGGTTCC TGTTCATCGGCGATGCGGCGGCCGACCTGCCGGGGCTGCTGGCCACCGCGCAGGGCAAGCGCCTCGCGCG GCCCGACAGCGCCCCCGACGATGGGGCCTGCTGGCGCTGGTGGCTGACCGGTGCGCTGACCGCCATCGAG GTGCAGCCCGCGGCGGTCGGCGAAGCCGCCGGCGCACCGCGCACGCGCGCCCTGTGGCTGCAGGCGCTGC TGGCGCTGGCCGAGCGGCGCGACCGCCTGCCGCTCAACGGCGTGGTCGCGTGCTTCTCCGCGAGCGAGCT GCTGCAGGCCGACGCCGACAGCCTGCGCCCCCTTGCCGCGAAGATGCGCCGGCTGATCGACGAGGCGGGC GACACCCTGCGCCTGCAGTTGCCCATGTACCTCGTCATCACCGGCCTGGAGCATCTGACGGGCTACGCCG CCCTGCGCGGCGCGCTGCCGCCCGAGGTGCTGGCGCAGGCGCTGGGCCATCGCCTGCCGGACCCGTTTGC CGCGCCCAGCGCAACCGCCGGCGATCGGCTCGATACGCTGTTCGACCCCATCGCCGCGCAACTGCAGAGC CTTCGCATGGCGTTGATGCGCGAGCAGCACGGGGCCGCGGCGCGGCTCTCGATCCATGGGTTCGTGGAAG CGGTGCAGGGATTGCAGCCCGCATTGCGCGAGGTGGCGGAGGTCTTGTTCGAGAGCCACGGCAAGGGCTC GCGCGCGCCGCGCTGGCGCGGCCTCTACTTCACTGCCGCCGCATCGGATGCAACTGGCGGGGCCTTCGTG ACCGATCTGTTCGAGCGCTTCCTGCCGGCCGATCAGCCCCTGGTGCGACCAGGGCGTCCGTCGTCCAACA CAGCGGCAGGTGCGCCATGA |