| Protein ID: 538392465 |
 SecReT6 ID | 845 |
| T6SS type | i3 |
| Gene symbol | - |
| Locus tag | VAPA_1c02350 |
| Strain | Variovorax paradoxus B4 |
| Replicon | chromosome I [GenBank: NC_022247] [Browse all T6SS(s) in this replicon] |
| Location [Strand] | 243977..246733 [+] |
| Product | type VI secretion ATPase, ClpV1 family |
| Note | TssH |
| UniProt ID | T1X5B3 |
| KEGG ID | vpd:VAPA_1c02350 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | AAA_2 [PF07724], Evalue: 4.70E-41, Aligned region: 229..264 AAA_2 [PF07724], Evalue: 4.70E-41, Aligned region: 648..814 AAA [PF00004], Evalue: 2.70E-19, Aligned region: 231..362 AAA [PF00004], Evalue: 2.70E-19, Aligned region: 654..738 AAA_5 [PF07728], Evalue: 7.20E-15, Aligned region: 231..251 AAA_5 [PF07728], Evalue: 7.20E-15, Aligned region: 356..391 AAA_5 [PF07728], Evalue: 7.20E-15, Aligned region: 465..506 AAA_5 [PF07728], Evalue: 7.20E-15, Aligned region: 653..772 ClpB_D2-small [PF10431], Evalue: 5.70E-14, Aligned region: 821..895 AAA_16 [PF13191], Evalue: 7.50E-09, Aligned region: 36..77 AAA_16 [PF13191], Evalue: 7.50E-09, Aligned region: 208..252 AAA_16 [PF13191], Evalue: 7.50E-09, Aligned region: 269..309 AAA_16 [PF13191], Evalue: 7.50E-09, Aligned region: 644..691 AAA_16 [PF13191], Evalue: 7.50E-09, Aligned region: 810..839 Sigma54_activat [PF00158], Evalue: 3.30E-08, Aligned region: 225..253 Sigma54_activat [PF00158], Evalue: 3.30E-08, Aligned region: 652..770 AAA_22 [PF13401], Evalue: 6.30E-08, Aligned region: 231..311 AAA_22 [PF13401], Evalue: 6.30E-08, Aligned region: 360..395 AAA_22 [PF13401], Evalue: 6.30E-08, Aligned region: 652..675 AAA_22 [PF13401], Evalue: 6.30E-08, Aligned region: 715..736 AAA_19 [PF13245], Evalue: 2.30E-06, Aligned region: 230..254 AAA_19 [PF13245], Evalue: 2.30E-06, Aligned region: 373..407 AAA_19 [PF13245], Evalue: 2.30E-06, Aligned region: 651..675 AAA_18 [PF13238], Evalue: 3.70E-06, Aligned region: 231..270 AAA_18 [PF13238], Evalue: 3.70E-06, Aligned region: 654..694 AAA_17 [PF13207], Evalue: 6.20E-06, Aligned region: 231..294 AAA_17 [PF13207], Evalue: 6.20E-06, Aligned region: 468..495 AAA_17 [PF13207], Evalue: 6.20E-06, Aligned region: 652..689 AAA_25 [PF13481], Evalue: 1.60E-05, Aligned region: 229..308 AAA_25 [PF13481], Evalue: 1.60E-05, Aligned region: 629..678 AAA_25 [PF13481], Evalue: 1.60E-05, Aligned region: 828..872 Zeta_toxin [PF06414], Evalue: 2.30E-05, Aligned region: 231..253 Zeta_toxin [PF06414], Evalue: 2.30E-05, Aligned region: 317..399 Zeta_toxin [PF06414], Evalue: 2.30E-05, Aligned region: 646..703 NACHT [PF05729], Evalue: 2.90E-05, Aligned region: 231..271 NACHT [PF05729], Evalue: 2.90E-05, Aligned region: 388..413 NACHT [PF05729], Evalue: 2.90E-05, Aligned region: 653..683 IstB_IS21 [PF01695], Evalue: 5.00E-05, Aligned region: 215..250 IstB_IS21 [PF01695], Evalue: 5.00E-05, Aligned region: 653..673 Clp_N [PF02861], Evalue: 5.30E-05, Aligned region: 26..75 Arch_ATPase [PF01637], Evalue: 5.30E-05, Aligned region: 209..251 Arch_ATPase [PF01637], Evalue: 5.30E-05, Aligned region: 283..328 Arch_ATPase [PF01637], Evalue: 5.30E-05, Aligned region: 652..672 AAA_29 [PF13555], Evalue: 5.80E-05, Aligned region: 223..249 AAA_29 [PF13555], Evalue: 5.80E-05, Aligned region: 651..678 AAA_14 [PF13173], Evalue: 0.00023, Aligned region: 231..363 AAA_14 [PF13173], Evalue: 0.00023, Aligned region: 652..763 RNA_helicase [PF00910], Evalue: 0.0014, Aligned region: 232..252 RNA_helicase [PF00910], Evalue: 0.0014, Aligned region: 654..675 RNA_helicase [PF00910], Evalue: 0.0014, Aligned region: 751..772 T2SE [PF00437], Evalue: 0.0037, Aligned region: 216..251 T2SE [PF00437], Evalue: 0.0037, Aligned region: 638..730 NTPase_1 [PF03266], Evalue: 0.0063, Aligned region: 231..253 NTPase_1 [PF03266], Evalue: 0.0063, Aligned region: 282..308 NTPase_1 [PF03266], Evalue: 0.0063, Aligned region: 653..674 Hpr_kinase_C [PF07475], Evalue: 0.0073, Aligned region: 231..245 Hpr_kinase_C [PF07475], Evalue: 0.0073, Aligned region: 650..670 TIP49 [PF06068], Evalue: 0.0085, Aligned region: 231..252 TIP49 [PF06068], Evalue: 0.0085, Aligned region: 285..311 TIP49 [PF06068], Evalue: 0.0085, Aligned region: 653..689 TIP49 [PF06068], Evalue: 0.0085, Aligned region: 809..836 DUF815 [PF05673], Evalue: 0.009, Aligned region: 224..307 DUF815 [PF05673], Evalue: 0.009, Aligned region: 653..691 |
| Protein Sequence: 918 a.a. [Download] |
| >gi|538392465|ref|YP_008514038.1| type VI secretion ATPase, ClpV1 family [Variovorax paradoxus B4] MTDIRRVSLFSKLNPMLYKALETATAFAKLRGNAYVELVHWLHQILQLQDSDLLRIVKRAGLNLDAVEQD LVRALDRLPHGATSISDISEHVDNAVERAWVYASLRFEATSIRGAYLLAGIVKTPGLRQVLSGISREFDK IVPDVLIAQLPAWTEGSPEDDFDAAAAPGQAAAAVSHQGEGAAAGGSALAKYASDLTAKARAGELDPVYG RDDEIRQIIDILMRRRQNNPLLTGEAGVGKTAVVEGLASRLAAGDVPPSLKDVSLWVLDPTLLQAGAGVK GEFEQRLRQVIDEVEKSPRPIVLFVDEVHTLVGAGGTAGTGDAANLLKPALARGRLRTIGATTWSEYKKY IEKDPALTRRFQTIQVHEPTESKAVVMLRGISAELEKHHGVLILDAALEAAVSLSHRYIPARQLPDKAVS LLDTACARVALSQHALPAAIEDLQRRIEVLGIESGIAGREAAIGVGEHQRVEDIAAQVAVARAELDLLEK RRVEESVLVERIVALRKLLSPDAVPVRAEAQPDDEAEEEGDAEEEGDAEAPARAEAVLSEPERTPEEIRA ELDQAQDRLVQLQGESPLILAAVDAQAIATVVADWTGIPIGRMVRDDAQSVLRLGEILSARVVAQPDALE TISRRIRTARARLDNPNKPVGVFLLCGPSGVGKTETALALSEALYGGEQNLVTINMSEFQESHTVSTLKG APPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTVIIMTS NVGTDLVMQLCEDPTLRPDPEPLAAALREPLLKVFAPALLGRLVVVPYYPLQADALHRIIRLQLDRIAAR LDANHGIALDYNDSAVELVARRCTAIESGGRMIDAILTHTILPRLSEEVIGATVSARKLAGVRLSAANDD FHYEFSER |
| Nucleotide Sequence: 2757 bp [Download] |
| >gi|538392231|ref|NC_022247.1|:243977-246733 Variovorax paradoxus B4 chromosome 1, complete sequence ATGACCGATATCCGCCGCGTCTCCCTTTTCTCCAAGCTGAATCCGATGCTCTACAAGGCATTGGAGACCG CCACCGCATTCGCCAAGCTGCGCGGCAACGCCTACGTGGAGCTGGTGCACTGGCTGCACCAGATCCTGCA ACTGCAGGACAGCGACCTGCTGCGCATCGTCAAGCGCGCCGGCCTCAACCTCGATGCGGTCGAGCAGGAC CTCGTGCGCGCGCTCGACCGACTGCCGCACGGCGCCACGTCGATCAGCGACATTTCGGAGCACGTCGACA ACGCCGTCGAGCGCGCCTGGGTCTATGCGAGCCTGCGCTTCGAGGCCACATCGATCCGCGGTGCCTACCT GCTCGCGGGCATCGTCAAGACCCCGGGGCTGCGCCAGGTGCTCTCGGGCATCTCGCGCGAGTTCGACAAG ATCGTGCCCGACGTTCTCATTGCCCAGCTTCCCGCATGGACCGAGGGCTCGCCCGAGGACGACTTCGACG CTGCGGCCGCGCCGGGGCAAGCCGCCGCAGCAGTGTCCCACCAGGGCGAGGGCGCTGCCGCGGGCGGCTC TGCGCTGGCCAAGTACGCGAGCGACCTCACGGCCAAGGCGCGTGCGGGCGAGCTCGATCCGGTCTACGGC CGCGACGACGAGATCCGCCAGATCATCGACATCCTCATGCGCCGGCGGCAGAACAATCCGCTGCTCACCG GCGAAGCGGGCGTGGGCAAGACGGCCGTGGTCGAAGGGCTGGCCTCGCGGCTCGCGGCGGGCGACGTGCC GCCCTCGCTCAAGGATGTGTCGCTCTGGGTGCTCGACCCCACGCTGCTGCAGGCCGGCGCGGGCGTGAAG GGTGAGTTCGAGCAGCGGCTGCGCCAGGTGATCGACGAGGTCGAGAAGAGCCCCAGGCCCATCGTGCTGT TCGTCGACGAGGTGCACACGCTGGTCGGCGCGGGCGGCACGGCCGGCACCGGCGATGCGGCCAACCTGCT GAAGCCGGCGCTCGCGCGCGGGCGGCTGCGCACCATCGGCGCCACCACCTGGTCCGAGTACAAGAAGTAC ATCGAAAAGGACCCGGCGCTCACGCGGCGCTTCCAGACCATCCAGGTGCACGAGCCCACCGAGTCCAAGG CCGTGGTCATGCTGCGCGGCATTTCGGCCGAGCTGGAGAAGCATCACGGCGTGCTCATTCTCGATGCCGC GCTCGAAGCGGCCGTGAGCCTGTCGCACCGCTACATTCCCGCGCGCCAGCTGCCCGACAAGGCCGTGAGC CTGCTCGACACCGCTTGCGCGCGCGTGGCCCTGAGCCAGCATGCGCTGCCCGCCGCGATCGAAGACCTGC AGCGCCGCATCGAGGTGCTGGGCATCGAGTCGGGCATTGCCGGGCGCGAGGCGGCGATCGGCGTCGGCGA GCACCAGCGCGTGGAGGACATTGCGGCCCAGGTGGCCGTGGCGCGGGCCGAGCTCGACCTGCTCGAGAAG CGGCGCGTGGAAGAAAGCGTGCTCGTCGAGCGCATCGTGGCACTGCGCAAGCTGCTGTCGCCCGACGCGG TGCCGGTGCGGGCCGAGGCGCAGCCGGATGACGAGGCCGAGGAGGAGGGCGATGCCGAGGAGGAGGGCGA TGCCGAGGCACCGGCCCGGGCCGAGGCCGTTCTGTCCGAGCCCGAGCGAACGCCCGAAGAGATCCGCGCC GAACTCGACCAGGCGCAGGACCGGCTCGTGCAGCTGCAGGGCGAATCCCCGCTCATCCTGGCGGCCGTCG ACGCGCAGGCCATTGCCACCGTGGTGGCCGACTGGACCGGCATTCCGATCGGCCGCATGGTGCGCGACGA CGCGCAGTCGGTGCTGCGCCTCGGCGAGATCCTCTCGGCCCGCGTCGTCGCGCAGCCCGATGCGCTGGAG ACCATCTCGCGGCGCATCCGCACCGCCCGCGCGCGGCTCGACAATCCGAACAAGCCCGTCGGCGTGTTCC TGCTGTGCGGCCCCTCGGGCGTGGGCAAGACCGAGACCGCGCTGGCGCTGTCCGAAGCGCTGTACGGCGG CGAGCAGAACCTCGTCACCATCAACATGAGCGAGTTCCAGGAGTCGCACACCGTCTCCACGCTCAAGGGC GCGCCGCCGGGCTACGTGGGCTACGGCGAAGGCGGCGTGCTCACCGAGGCCGTGCGCCGGCGTCCGTACA GCGTGGTGCTGCTCGACGAAATCGAGAAGGCCCACCCCGATGTGCACGAGATCTTCTTCCAGGTGTTCGA CAAGGGCTGGATGGAAGACGGCGAGGGCCGCCACATCGATTTCCGCAACACCGTGATCATCATGACCTCC AACGTCGGCACCGACCTGGTCATGCAGCTGTGCGAAGACCCGACCCTGCGCCCCGACCCGGAGCCCTTGG CGGCCGCATTGCGCGAACCGCTGCTCAAGGTGTTCGCGCCGGCGCTGCTGGGCCGGCTGGTTGTAGTGCC TTATTACCCGTTGCAAGCCGATGCGTTGCACCGCATCATTCGCCTTCAGCTCGACCGTATTGCCGCGCGC CTCGATGCAAACCATGGCATTGCCCTGGACTACAACGACAGCGCCGTCGAACTGGTGGCGCGCCGGTGCA CCGCCATCGAGTCGGGCGGACGGATGATCGATGCGATCCTCACGCACACCATCCTTCCGCGGTTGAGCGA AGAAGTCATCGGTGCCACGGTCAGTGCGCGCAAGCTCGCCGGCGTGCGGTTGAGCGCGGCGAACGACGAT TTCCACTACGAATTTTCTGAACGCTGA |