I. Summary
SecReT6 ID10 insolico
StrainBordetella parapertussis 12822
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BPP0705744328..745278 [+], 95133595402LysR family transcriptional regulator 
2BPP0706745275..745985 [-], 71133595403transcriptional regulator 
3BPP0708748488..748901 [+], 41433595404hypothetical protein 
4BPP0709748898..751447 [+], 255033595405hypothetical protein 
5BPP0711752527..753432 [+], 90633595406hypothetical protein 
6BPP0712753473..754033 [+], 56133595407hypothetical protein 
7BPP0713754606..755655 [+], 105033595408hypothetical protein  TssA
8BPP0714755698..756261 [+], 56433595409hypothetical protein  TssB
9BPP0715756283..757785 [+], 150333595410hypothetical protein  TssC
10BPP0716757843..758328 [+], 48633595411hypothetical protein  TssD
11BPP0717758378..759187 [+], 81033595412hypothetical protein  TagJ
12BPP0718759184..759702 [+], 51933595413hypothetical protein  TssE
13BPP0719759702..761615 [+], 191433595414hypothetical protein  TssF
14BPP0720761650..762309 [+], 66033595415hypothetical protein 
15BPP0721762312..763406 [+], 109533595416hypothetical protein  TssG
16BPP0722763403..763936 [+], 53433595417hypothetical protein 
17BPP0723763926..764303 [+], 37833595418hypothetical protein 
18BPP0724764327..766900 [+], 257433595419ATPase  TssH
19BPP0725766999..767799 [-], 80133595420hypothetical protein  Fha
20BPP0726767827..768222 [-], 39633595421lipoprotein 
21BPP0727768487..769029 [+], 54333595422lipoprotein  TssJ
22BPP0728769075..770409 [+], 133533595423hypothetical protein  TssK
23BPP0729770430..771710 [+], 128133595424hypothetical protein  TssL
24BPP0730771707..775312 [+], 360633595425hypothetical protein  TssM
25BPP0731775309..776043 [+], 73533595426hypothetical protein 
26BPP0732776068..777270 [+], 120333595427hypothetical protein 
27BPP0734778708..780120 [+], 141333595428lipoprotein 
28BPP0735780128..783082 [-], 295533595429autotransporter 
29BPP0737 (modD)785017..786126 [-], 111033595430molybdenum transport ATP-binding protein 
30BPP0738 (modC)786138..786818 [-], 68133595431molybdenum transport system permease 
31BPP0739 (modB)786840..787595 [-], 75633595432molybdate-binding periplasmic protein precursor 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation