I. Summary

SecReT6 ID	10
Strain	Bordetella parapertussis 12822
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_002928
Location	748898..783082
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BPP0705	744328..745278 [+], 951	33595402	LysR family transcriptional regulator
2	BPP0706	745275..745985 [-], 711	33595403	transcriptional regulator
3	BPP0708	748488..748901 [+], 414	33595404	hypothetical protein
4	BPP0709	748898..751447 [+], 2550	33595405	hypothetical protein
5	BPP0711	752527..753432 [+], 906	33595406	hypothetical protein
6	BPP0712	753473..754033 [+], 561	33595407	hypothetical protein
7	BPP0713	754606..755655 [+], 1050	33595408	hypothetical protein	TssA
8	BPP0714	755698..756261 [+], 564	33595409	hypothetical protein	TssB
9	BPP0715	756283..757785 [+], 1503	33595410	hypothetical protein	TssC
10	BPP0716	757843..758328 [+], 486	33595411	hypothetical protein	TssD
11	BPP0717	758378..759187 [+], 810	33595412	hypothetical protein	TagJ
12	BPP0718	759184..759702 [+], 519	33595413	hypothetical protein	TssE
13	BPP0719	759702..761615 [+], 1914	33595414	hypothetical protein	TssF
14	BPP0720	761650..762309 [+], 660	33595415	hypothetical protein
15	BPP0721	762312..763406 [+], 1095	33595416	hypothetical protein	TssG
16	BPP0722	763403..763936 [+], 534	33595417	hypothetical protein
17	BPP0723	763926..764303 [+], 378	33595418	hypothetical protein
18	BPP0724	764327..766900 [+], 2574	33595419	ATPase	TssH
19	BPP0725	766999..767799 [-], 801	33595420	hypothetical protein	Fha
20	BPP0726	767827..768222 [-], 396	33595421	lipoprotein
21	BPP0727	768487..769029 [+], 543	33595422	lipoprotein	TssJ
22	BPP0728	769075..770409 [+], 1335	33595423	hypothetical protein	TssK
23	BPP0729	770430..771710 [+], 1281	33595424	hypothetical protein	TssL
24	BPP0730	771707..775312 [+], 3606	33595425	hypothetical protein	TssM
25	BPP0731	775309..776043 [+], 735	33595426	hypothetical protein
26	BPP0732	776068..777270 [+], 1203	33595427	hypothetical protein
27	BPP0734	778708..780120 [+], 1413	33595428	lipoprotein
28	BPP0735	780128..783082 [-], 2955	33595429	autotransporter
29	BPP0737 (modD)	785017..786126 [-], 1110	33595430	molybdenum transport ATP-binding protein
30	BPP0738 (modC)	786138..786818 [-], 681	33595431	molybdenum transport system permease
31	BPP0739 (modB)	786840..787595 [-], 756	33595432	molybdate-binding periplasmic protein precursor

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation