I. Summary
SecReT6 ID100 insolico
StrainPelobacter carbinolicus DSM 2380
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Pcar_27963264656..3264817 [-], 16277920386rubredoxin 
2Pcar_27973264904..3265440 [-], 53777920387rubrerythrin 
3Pcar_27983265513..3265953 [-], 441116878630Fe2+/Zn2+ uptake regulation proteins 
4Pcar_27993266308..3266622 [+], 31577920389hypothetical protein 
5Pcar_28003266716..3267063 [-], 34877920390hypothetical protein 
6Pcar_28013267125..3267811 [-], 68777920391hypothetical protein 
7Pcar_28023268212..3269525 [+], 131477920392phosphatidylserine synthase 
8Pcar_28033269618..3271252 [-], 163577920393hypothetical protein 
9Pcar_28043271707..3272756 [+], 105077920394fructose-bisphosphate aldolase 
10Pcar_28053272805..3273509 [-], 70577920395hypothetical protein 
11Pcar_28063273717..3273974 [-], 25877920396cold shock proteins 
12Pcar_33813274067..3274282 [+], 216116878631hypothetical protein 
13Pcar_28073274554..3275129 [+], 57677920397hypothetical protein 
14Pcar_28083275129..3275593 [+], 46577920398hypothetical protein  TssJ
15Pcar_28093275715..3277043 [+], 132977920399hypothetical protein  TssK
16Pcar_28103277049..3277774 [+], 72677920400hypothetical protein  TssL
17Pcar_28113277808..3281395 [+], 358877920401hypothetical protein  TssM
18Pcar_28123281407..3282420 [+], 101477920402hypothetical protein 
19Pcar_28133282417..3283943 [+], 152777920403hypothetical protein  TssA
20Pcar_28143284003..3284530 [+], 52877920404hypothetical protein  TssB
21Pcar_28153284548..3286089 [+], 154277920405hypothetical protein  TssC
22Pcar_28163286337..3286822 [+], 48677920406hypothetical protein  TssD
23Pcar_28173286941..3287369 [+], 42977920407hypothetical protein  TssE
24Pcar_28183287362..3289119 [+], 175877920408hypothetical protein  TssF
25Pcar_28193289083..3290060 [+], 97877920409hypothetical protein  TssG
26Pcar_28203290118..3292817 [+], 270077920410heat shock protein ClpB-like  TssH
27Pcar_2821 (vgrE)3292979..3295051 [+], 207377920411Rhs element protein VgrE  TssI
28Pcar_28223295170..3297539 [+], 237077920412Rhs element protein, VgrG-like  TssI
29Pcar_28233297546..3300362 [+], 281777920413hypothetical protein 
30Pcar_28243300437..3301507 [+], 107177920414hypothetical protein 
31Pcar_28253301659..3302084 [+], 42677920415hypothetical protein 
32Pcar_28263302087..3303325 [+], 123977920416hypothetical protein 
33Pcar_28273303312..3304370 [+], 105977920417hypothetical protein 
34Pcar_28283304367..3305470 [+], 110477920418hypothetical protein 
35Pcar_28293305603..3306145 [+], 54377920419hypothetical protein  PAAR
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation