I. Summary
SecReT6 ID101 insolico
StrainXanthomonas campestris pv. vesicatoria str. 85-10
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XCV21102421252..2421875 [+], 62478047666hypothetical protein 
2XCV2111 (lytS)2422079..2423119 [+], 104178047667two-component system sensor protein 
3XCV2112 (lytT)2423098..2423820 [+], 72378047668two-component system regulatory protein 
4XCV2113 (ampC1)2423965..2425338 [-], 137478047669beta-lactamase precursor 
5XCV21142425734..2426150 [+], 41778047670hypothetical protein 
6XCV2115 (sndH1)2426147..2427460 [+], 131478047671L-sorbosone dehydrogenase 
7XCV21162427704..2428738 [+], 103578047672GFO/IDH/MOCA family oxidoreductase 
8XCV21172429057..2429281 [-], 22578047673hypothetical protein 
9XCV21182429665..2430627 [-], 96378047674hypothetical protein 
10XCV21192430754..2431170 [-], 41778047675hypothetical protein 
11XCV21202431311..2431817 [+], 50778047676hypothetical protein  TssB
12XCV21212431753..2433327 [+], 157578047677hypothetical protein  TssC
13XCV21222433427..2433930 [+], 50478047678hypothetical protein  TssD
14XCV21232433957..2434796 [+], 84078047679ImpE-like protein  TagJ
15XCV21242434784..2435287 [+], 50478047680hypothetical protein  TssE
16XCV21252435290..2437167 [+], 187878047681hypothetical protein  TssF
17XCV21262437131..2438141 [+], 101178047682hypothetical protein  TssG
18XCV2127 (clpB1)2438174..2440912 [+], 273978047683ATP-dependent Clp protease subunit  TssH
19XCV21282440984..2441373 [+], 39078047684hypothetical protein 
20XCV21292441565..2442113 [+], 54978047685hypothetical protein 
21XCV21302443138..2443392 [+], 25578047686hypothetical protein 
22XCV21312443377..2443856 [+], 48078047687hypothetical protein 
23XCV21322443853..2444422 [+], 57078047688hypothetical protein 
24XCV21332444452..2446536 [+], 208578047689hypothetical protein  TssI
25XCV21342446545..2447084 [+], 54078047690hypothetical protein 
26XCV21352447081..2448466 [+], 138678047691hypothetical protein  Fha
27XCV21362448463..2449800 [+], 133878047692hypothetical protein  TssK
28XCV21372449802..2451118 [+], 131778047693OmpA family protein  TssL
29XCV21382451122..2454580 [+], 345978047694hypothetical protein  TssM
30XCV21392454577..2455230 [+], 65478047695hypothetical protein 
31XCV21402455227..2455949 [+], 72378047696phosphoprotein phosphatase 
32XCV21412455946..2458849 [+], 290478047697protein kinase 
33XCV21422458846..2459172 [+], 32778047698hypothetical protein 
34XCV21432459341..2460369 [-], 102978047699hypothetical protein  TssA
35XCV21442460378..2461349 [-], 97278047700LysR family transcriptional regulator 
36XCV2145 (virA)2461463..2463919 [-], 245778047701two-component VirA-like sensor kinase 
37XCV21462463916..2464908 [-], 99378047702cytochrome C peroxidase 
38XCV2147 (virG)2464905..2465684 [-], 78078047703VirG-like two-component system regulatory protein 
39XCV21482466086..2466913 [-], 82878047704hypothetical protein 
40XCV21492466961..2468547 [-], 158778047705choline dehydrogenase 
41XCV21502468942..2470360 [+], 141978047706cytochrome P-450 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation