I. Summary
SecReT6 ID102 insolico
StrainXanthomonas campestris pv. vesicatoria str. 85-10
Repliconchromosome [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XCV42044823183..4824865 [-], 168378049760hemolysin activator protein 
2XCV42054824856..4825317 [-], 46278049761hypothetical protein 
3XCV42064825314..4829009 [-], 369678049762protein kinase 
4XCV42074829014..4829730 [-], 71778049763protein phosphatase 
5XCV42084829727..4830311 [-], 58578049764hypothetical protein 
6XCV42094830299..4833823 [-], 352578049765hypothetical protein  TssM
7XCV42104833826..4835082 [-], 125778049766hypothetical protein  TssL
8XCV42114835085..4836419 [-], 133578049767hypothetical protein  TssK
9XCV42124836922..4837812 [-], 89178049768oxidoreductase 
10XCV42134838041..4838943 [+], 90378049769LysR family transcriptional regulator 
11XCV42144839002..4840333 [-], 133278049770hypothetical protein  Fha
12XCV42154840409..4840642 [-], 23478049771hypothetical protein 
13XCV42164840653..4841201 [-], 54978049772hypothetical protein 
14XCV42174841198..4843165 [-], 196878049773hypothetical protein  TssI
15XCV42184843315..4844646 [-], 133278049774hypothetical protein 
16XCV42194844882..4845196 [-], 31578049775hypothetical protein  PAAR
17XCV42204845240..4847741 [-], 250278049776protein kinase 
18XCV4221 (rpoE8)4847738..4848304 [-], 56778049777RNA polymerase ECF-type sigma factor 
19XCV4222 (rpoE9)4848627..4849154 [+], 52878049778ECF subfamily RNA polymerase sigma factor 
20XCV42234849145..4850221 [+], 107778049779FecR family transmembrane sensor protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation