I. Summary
SecReT6 ID103 insolico
StrainXanthomonas campestris pv. vesicatoria str. 85-10
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XCV42254853675..4854976 [+], 130278049781acid phosphatase precursor 
2XCV42264855049..4856353 [+], 130578049782hypothetical protein 
3XCV42274856971..4857705 [-], 73578049783hypothetical protein 
4XCV42284857766..4858425 [-], 66078049784hypothetical protein 
5XCV42294858477..4858866 [-], 39078049785hypothetical protein 
6XCV42304858983..4859192 [-], 21078049786hypothetical protein 
7XCV42314859397..4859939 [-], 54378049787hypothetical protein 
8XCV42324860021..4860329 [-], 30978049788hypothetical protein 
9XCV42334861394..4861891 [-], 49878049789hypothetical protein 
10XCV42344862063..4862329 [+], 26778049790IS1477 transposase 
11XCV42354862362..4863195 [+], 83478049791IS1477 transposase 
12XCV4236 (clpB)4863335..4866097 [-], 276378049792ClpB protein  TssH
13XCV42374866154..4867194 [-], 104178049793hypothetical protein  TssG
14XCV42384867158..4869068 [-], 191178049794hypothetical protein  TssF
15XCV42394869046..4869549 [-], 50478049795hypothetical protein  TssE
16XCV42404869555..4870349 [-], 79578049796hypothetical protein  TagJ
17XCV42414870553..4871056 [-], 50478049797hypothetical protein  TssD
18XCV42424871139..4872632 [-], 149478049798hypothetical protein  TssC
19XCV42434872637..4873146 [-], 51078049799hypothetical protein  TssB
20XCV42444873456..4874127 [+], 67278049800AraC family transcriptional regulator 
21XCV42454874224..4874670 [-], 44778049801universal stress protein family protein 
22XCV42464874921..4875544 [-], 62478049802acetyltransferase 
23XCV42474875802..4876164 [+], 36378049803hypothetical protein 
24XCV4248 (uvrD)4876347..4878518 [-], 217278049804DNA-dependent helicase II 
25XCV42494878865..4880268 [-], 140478049805hypothetical protein 
26XCV42504880438..4880833 [+], 39678049806hypothetical protein 
27XCV4251 (cls)4880844..4882367 [-], 152478049807cardiolipin synthase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation