I. Summary
SecReT6 ID107 insolico
StrainGeobacter metallireducens GS-15
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Gmet_0261292417..294162 [-], 174678221484response regulator receiver domain-containing protein 
2Gmet_0262294363..295022 [+], 66078221485hypothetical protein 
3Gmet_0263295053..295853 [+], 80178221486Alpha/beta hydrolase fold 
4Gmet_0264295860..296786 [-], 92778221487cysteine synthase 
5Gmet_0265296892..297494 [+], 60378221488NUDIX hydrolase 
6Gmet_0266297518..297910 [-], 39378221489hypothetical protein 
7Gmet_0267298034..298846 [+], 81378221490tRNA pseudouridine synthase C 
8Gmet_0268298880..299368 [+], 48978221491methionine sulfoxide reductase A 
9Gmet_0269299386..299868 [+], 48378221492hypothetical protein 
10Gmet_0270299885..300904 [+], 102078221493L-threonine aldolase 
11Gmet_0271300992..301654 [+], 66378221494lipoprotein 
12Gmet_0272301651..301962 [+], 31278221495hypothetical protein 
13Gmet_0273302320..303000 [+], 68178221496hypothetical protein  TssL
14Gmet_0274303002..306466 [+], 346578221497hypothetical protein  TssM
15Gmet_0275306508..308880 [+], 237378221498ImpA domain-containing protein  TssA
16Gmet_0276308902..309546 [+], 64578221499hypothetical protein 
17Gmet_0277309543..309872 [+], 33078221500hypothetical protein 
18Gmet_0278309957..310445 [+], 48978221501hypothetical protein  TssB
19Gmet_0279310458..311936 [+], 147978221502hypothetical protein  TssC
20Gmet_0280312033..312518 [+], 48678221503hypothetical protein  TssD
21Gmet_0281312658..313446 [+], 78978221504hypothetical protein 
22Gmet_0282313724..313975 [-], 25278221505hypothetical protein 
23Gmet_0283314162..315238 [-], 107778221506transposase IS4 
24Gmet_0284315572..316501 [+], 93078221507hypothetical protein 
25Gmet_0285316524..317402 [+], 87978221508hypothetical protein 
26Gmet_0286317492..319621 [+], 213078221509Rhs element Vgr protein:Gp5-like  TssI
27Gmet_0287319623..320759 [+], 1137782215103-oxoacyl-ACP synthase 
28Gmet_0288320790..321503 [+], 71478221511hypothetical protein 
29Gmet_0289321537..322541 [+], 100578221512hypothetical protein 
30Gmet_0290322542..324599 [+], 205878221513hypothetical protein 
31Gmet_0291324648..325661 [+], 101478221514hypothetical protein 
32Gmet_0292326003..328753 [+], 275178221515fibronectin type III domain-containing protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation