I. Summary

SecReT6 ID	108
Strain	Geobacter metallireducens GS-15
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_007517
Location	3720361..3738389
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	0	0	0	0	0	0	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Gmet_3303	3716370..3717716 [-], 1347	78224494	hypothetical protein
2	Gmet_3304	3717764..3719077 [-], 1314	78224495	Acetyl-CoA hydrolase/transferase
3	Gmet_3305	3719175..3720299 [-], 1125	78224496	enoyl-CoA hydratase/isomerase
4	Gmet_3306	3720361..3721503 [-], 1143	78224497	Acyl-CoA dehydrogenase-like
5	Gmet_3307	3721550..3722692 [-], 1143	78224498	Acyl-CoA dehydrogenase-like
6	Gmet_3308	3722946..3724592 [+], 1647	78224499	sigma-54 dependent trancsriptional regulator
7	Gmet_3309	3724596..3725057 [-], 462	78224500	NUDIX hydrolase
8	Gmet_3310	3725357..3725911 [+], 555	78224501	lipoprotein	TssJ
9	Gmet_3311	3725908..3727299 [+], 1392	78224502	hypothetical protein	TssK
10	Gmet_3312	3727303..3727713 [+], 411	78224503	hypothetical protein	TssE
11	Gmet_3313	3727743..3729473 [+], 1731	78224504	hypothetical protein	TssF
12	Gmet_3314	3729437..3730426 [+], 990	78224505	hypothetical protein	TssG
13	Gmet_3315	3730457..3733093 [+], 2637	78224506	AAA ATPase	TssH
14	Gmet_3316	3733090..3733536 [+], 447	78224507	lipoprotein
15	Gmet_3317	3733840..3734340 [+], 501	78224508	CheW protein
16	Gmet_3318	3734343..3734855 [+], 513	78224509	hypothetical protein
17	Gmet_3319	3734852..3735802 [+], 951	78224510	F420-non-reducing hydrogenase subunit G
18	Gmet_3320	3735780..3737201 [+], 1422	78224511	nickel-dependent hydrogenase, large subunit
19	Gmet_3321	3737201..3737452 [+], 252	78224512	ferredoxin family protein
20	Gmet_3322	3737449..3737907 [+], 459	78224513	hypothetical protein
21	Gmet_3323	3737925..3738389 [+], 465	78224514	peptidase M52, hydrogen uptake protein
22	Gmet_3324	3738391..3739995 [+], 1605	78224515	methyl-accepting chemotaxis sensory transducer
23	Gmet_3325	3740078..3741382 [-], 1305	78224516	aminotransferase
24	Gmet_3326	3741635..3742225 [-], 591	78224517	hypothetical protein
25	Gmet_3327	3742228..3742692 [-], 465	78224518	hypothetical protein
26	Gmet_3328	3742700..3743050 [-], 351	78224519	glyoxalase/bleomycin resistance protein/dioxygenase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

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