SecReT6
I. Summary
SecReT6 ID108 insolico
StrainGeobacter metallireducens GS-15
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_007517
Location3720361..3738389
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100000011
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Gmet_33033716370..3717716 [-], 134778224494hypothetical protein 
2Gmet_33043717764..3719077 [-], 131478224495Acetyl-CoA hydrolase/transferase 
3Gmet_33053719175..3720299 [-], 112578224496enoyl-CoA hydratase/isomerase 
4Gmet_33063720361..3721503 [-], 114378224497Acyl-CoA dehydrogenase-like 
5Gmet_33073721550..3722692 [-], 114378224498Acyl-CoA dehydrogenase-like 
6Gmet_33083722946..3724592 [+], 164778224499sigma-54 dependent trancsriptional regulator 
7Gmet_33093724596..3725057 [-], 46278224500NUDIX hydrolase 
8Gmet_33103725357..3725911 [+], 55578224501lipoprotein  TssJ
9Gmet_33113725908..3727299 [+], 139278224502hypothetical protein  TssK
10Gmet_33123727303..3727713 [+], 41178224503hypothetical protein  TssE
11Gmet_33133727743..3729473 [+], 173178224504hypothetical protein  TssF
12Gmet_33143729437..3730426 [+], 99078224505hypothetical protein  TssG
13Gmet_33153730457..3733093 [+], 263778224506AAA ATPase  TssH
14Gmet_33163733090..3733536 [+], 44778224507lipoprotein 
15Gmet_33173733840..3734340 [+], 50178224508CheW protein 
16Gmet_33183734343..3734855 [+], 51378224509hypothetical protein 
17Gmet_33193734852..3735802 [+], 95178224510F420-non-reducing hydrogenase subunit G 
18Gmet_33203735780..3737201 [+], 142278224511nickel-dependent hydrogenase, large subunit 
19Gmet_33213737201..3737452 [+], 25278224512ferredoxin family protein 
20Gmet_33223737449..3737907 [+], 45978224513hypothetical protein 
21Gmet_33233737925..3738389 [+], 46578224514peptidase M52, hydrogen uptake protein 
22Gmet_33243738391..3739995 [+], 160578224515methyl-accepting chemotaxis sensory transducer 
23Gmet_33253740078..3741382 [-], 130578224516aminotransferase 
24Gmet_33263741635..3742225 [-], 59178224517hypothetical protein 
25Gmet_33273742228..3742692 [-], 46578224518hypothetical protein 
26Gmet_33283742700..3743050 [-], 35178224519glyoxalase/bleomycin resistance protein/dioxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation