I. Summary
SecReT6 ID109 insolico
StrainHahella chejuensis KCTC 2396
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1HCH_042414381935..4384559 [+], 262583646938signal transduction histidine kinase 
2HCH_042424384561..4386051 [-], 149183646939serine/threonine protein kinase 
3HCH_042434386092..4386241 [-], 15083646940hypothetical protein 
4HCH_042444386334..4388241 [-], 190883646941hypothetical protein 
5HCH_042454388448..4389425 [-], 97883646942hypothetical protein 
6HCH_042464389751..4391028 [+], 127883646943hypothetical protein  TssA
7HCH_042474391108..4391641 [+], 53483646944hypothetical protein  TssB
8HCH_042484391641..4393134 [+], 149483646945hypothetical protein  TssC
9HCH_042494393264..4394772 [+], 150983646946hypothetical protein  TssC
10HCH_042504394782..4395273 [+], 49283646947hypothetical protein  TssE
11HCH_042514395273..4397102 [+], 183083646948hypothetical protein  TssF
12HCH_042524397066..4398187 [+], 112283646949hypothetical protein  TssG
13HCH_042534398184..4400943 [+], 276083646950chaperone activity ATPase ATP-binding subunit  TssH
14HCH_042544400969..4401670 [+], 70283646951transposase 
15HCH_042554401707..4402120 [+], 41483646952lactoylglutathione lyase 
16HCH_042564402227..4403156 [-], 93083646953transcriptional regulator 
17HCH_042574403275..4403571 [+], 29783646954hypothetical protein 
18HCH_042584403616..4403864 [+], 24983646955hypothetical protein 
19HCH_042594403898..4404284 [+], 38783646956YjgF family translation initiation inhibitor 
20HCH_04260 (lipH)4404317..4405390 [-], 107483646957lipase chaperone 
21HCH_042614405524..4406504 [-], 98183646958alpha/beta fold superfamily hydrolase/acyltransferase 
22HCH_042624406715..4407266 [-], 55283646959hypothetical protein 
23HCH_042634407332..4407904 [-], 57383646960hypothetical protein 
24HCH_042644408060..4408470 [-], 41183646961CheY-like receiver protein 
25HCH_042664408141..4408611 [+], 47183646962hypothetical protein 
26HCH_042654408542..4408907 [-], 36683646963CheY-like receiver protein 
27HCH_042674408918..4411296 [-], 237983646964signal transduction histidine kinase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation