I. Summary
SecReT6 ID11 insolico
StrainGeobacter sulfurreducens PCA
Repliconchromosome [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1GSU0416446799..448238 [+], 144039995524hypothetical protein 
2GSU0417 (flgD)448263..448919 [+], 65739995525flagellar hook assembly protein FlgD 
3GSU0418448927..449313 [+], 38739995526hypothetical protein 
4GSU0419 (flgE)449476..450735 [+], 126039995527flagellar hook protein FlgE 
5GSU0420451106..451627 [+], 52239995528flagellar protein FliL 
6GSU0421 (fliM)451662..452648 [+], 98739995529flagellar motor switch protein FliM 
7GSU0422 (fliN)452645..452950 [+], 30639995530flagellar motor switch protein FliN 
8GSU0423 (fliP)453450..454217 [+], 76839995531flagellar biosynthesis protein FliP 
9GSU0424 (fliQ)454230..454499 [+], 27039995532flagellar biosynthetic protein FliQ 
10GSU0425 (fliR)454550..455344 [+], 79539995533flagellar biosynthesis protein FliR 
11GSU0426 (flhB)455349..456407 [+], 105939995534flagellar biosynthesis protein FlhB 
12GSU0427456466..456936 [-], 47139995535lipoprotein 
13GSU0428457223..457777 [+], 55539995536lipoprotein  TssJ
14GSU0429457774..459165 [+], 139239995537hypothetical protein  TssK
15GSU0430459169..459576 [+], 40839995538tail lysozyme  TssE
16GSU0431459605..461338 [+], 173439995539hypothetical protein  TssF
17GSU0432461302..462294 [+], 99339995540hypothetical protein  TssG
18GSU0433462307..464934 [+], 262839995541clpB protein  TssH
19GSU0434464944..465948 [-], 100539995542hypothetical protein 
20GSU0435466122..467771 [+], 165039995543MSHA biogenesis protein MshE 
21GSU0436 (pilT-3)467785..468855 [+], 107139995544twitching motility protein PilT 
22GSU0437 (ubiD)469239..470654 [+], 1416399955453-octaprenyl-4-hydroxybenzoate carboxy-lyase 
23GSU0438470654..471184 [+], 53139995546lipoprotein 
24GSU0439471184..472080 [+], 89739995547prenyltransferase 
25GSU0440472077..472700 [+], 624399955483-octaprenyl-4-hydroxybenzoate carboxy-lyase 
26GSU0441472705..473790 [+], 108639995549radical SAM protein 
27GSU0442473790..474854 [+], 106539995550radical SAM protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation