I. Summary

SecReT6 ID	110
Strain	Hahella chejuensis KCTC 2396
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_007645
Location	4432871..4453909
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	0	0	0	0	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	HCH_04282	4429095..4430210 [+], 1116	83646979	3-oxoacyl-ACP synthase
2	HCH_04283	4430207..4431049 [+], 843	83646980	hypothetical protein
3	HCH_04285	4431104..4431685 [+], 582	83646981	hypothetical protein
4	HCH_04284	4431656..4431781 [-], 126	83646982	hypothetical protein
5	HCH_04286	4432271..4432861 [+], 591	83646983	hypothetical protein
6	HCH_04287	4432871..4433452 [+], 582	83646984	hypothetical protein
7	HCH_04288	4433459..4434040 [+], 582	83646985	hypothetical protein
8	HCH_04289	4434027..4434629 [+], 603	83646986	hypothetical protein
9	HCH_04290	4434636..4435217 [+], 582	83646987	hypothetical protein
10	HCH_04291	4435221..4435814 [+], 594	83646988	hypothetical protein
11	HCH_04292	4435848..4436624 [+], 777	83646989	hypothetical protein
12	HCH_04293	4436771..4437598 [-], 828	83646990	hypothetical protein
13	HCH_04294	4438269..4438757 [+], 489	83646991	hemolysin-coregulated protein	TssD
14	HCH_04295	4438922..4439200 [-], 279	83646992	hypothetical protein
15	HCH_04296	4439169..4439894 [-], 726	83646993	serine/threonine protein phosphatase
16	HCH_04297	4439965..4440657 [-], 693	83646994	hypothetical protein
17	HCH_04298	4440744..4444202 [-], 3459	83646995	hypothetical protein	TssM
18	HCH_04299	4444288..4445169 [-], 882	83646996	hypothetical protein	TssL
19	HCH_04300	4445274..4446611 [-], 1338	83646997	hypothetical protein	TssK
20	HCH_04301	4446626..4447105 [-], 480	83646998	hypothetical protein	TssJ
21	HCH_04302	4447332..4449218 [-], 1887	83646999	FHA domain-containing protein	Fha
22	HCH_04303	4449681..4450439 [+], 759	83647000	CheY-like receiver protein
23	HCH_04304	4450662..4450784 [-], 123	83647001	hypothetical protein
24	HCH_04305	4450774..4452399 [+], 1626	83647002	CheY-like receiver protein
25	HCH_04306	4452406..4453095 [+], 690	83647003	signal transduction histidine kinase
26	HCH_04307	4453142..4453909 [-], 768	83647004	metal-binding protein containing
27	HCH_04308	4454266..4456989 [+], 2724	83647005	transcriptional regulator MalT
28	HCH_04309	4457187..4458530 [+], 1344	83647006	glycosidase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

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