I. Summary
SecReT6 ID110 insolico
StrainHahella chejuensis KCTC 2396
Repliconchromosome [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1HCH_042824429095..4430210 [+], 1116836469793-oxoacyl-ACP synthase 
2HCH_042834430207..4431049 [+], 84383646980hypothetical protein 
3HCH_042854431104..4431685 [+], 58283646981hypothetical protein 
4HCH_042844431656..4431781 [-], 12683646982hypothetical protein 
5HCH_042864432271..4432861 [+], 59183646983hypothetical protein 
6HCH_042874432871..4433452 [+], 58283646984hypothetical protein 
7HCH_042884433459..4434040 [+], 58283646985hypothetical protein 
8HCH_042894434027..4434629 [+], 60383646986hypothetical protein 
9HCH_042904434636..4435217 [+], 58283646987hypothetical protein 
10HCH_042914435221..4435814 [+], 59483646988hypothetical protein 
11HCH_042924435848..4436624 [+], 77783646989hypothetical protein 
12HCH_042934436771..4437598 [-], 82883646990hypothetical protein 
13HCH_042944438269..4438757 [+], 48983646991hemolysin-coregulated protein  TssD
14HCH_042954438922..4439200 [-], 27983646992hypothetical protein 
15HCH_042964439169..4439894 [-], 72683646993serine/threonine protein phosphatase 
16HCH_042974439965..4440657 [-], 69383646994hypothetical protein 
17HCH_042984440744..4444202 [-], 345983646995hypothetical protein  TssM
18HCH_042994444288..4445169 [-], 88283646996hypothetical protein  TssL
19HCH_043004445274..4446611 [-], 133883646997hypothetical protein  TssK
20HCH_043014446626..4447105 [-], 48083646998hypothetical protein  TssJ
21HCH_043024447332..4449218 [-], 188783646999FHA domain-containing protein  Fha
22HCH_043034449681..4450439 [+], 75983647000CheY-like receiver protein 
23HCH_043044450662..4450784 [-], 12383647001hypothetical protein 
24HCH_043054450774..4452399 [+], 162683647002CheY-like receiver protein 
25HCH_043064452406..4453095 [+], 69083647003signal transduction histidine kinase 
26HCH_043074453142..4453909 [-], 76883647004metal-binding protein containing 
27HCH_043084454266..4456989 [+], 272483647005transcriptional regulator MalT 
28HCH_043094457187..4458530 [+], 134483647006glycosidase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation