I. Summary

SecReT6 ID	111
Strain	Burkholderia thailandensis E264
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_007650
Location	137720..169613
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	2	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

14

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BTH_II0115	132907..133461 [+], 555	83717319	frimbrial protein
2	BTH_II0116	133543..134268 [+], 726	83717851	fimbrial chaperone protein ecpD
3	BTH_II0117	134305..137124 [+], 2820	83716782	outer membrane usher protein
4	BTH_II0118	137144..137689 [+], 546	83716399	major fimbrial subunit protein
5	BTH_II0119	137720..138409 [+], 690	83717840	hypothetical protein	TssL
6	BTH_II0120	138412..140088 [+], 1677	83717470	hypothetical protein	TagL
7	BTH_II0121	140432..140971 [+], 540	83716514	hypothetical protein	TssB
8	BTH_II0122	141005..142504 [+], 1500	83716153	hypothetical protein	TssC
9	BTH_II0123	142705..143187 [+], 483	83717589	hypothetical protein	TssD
10	BTH_II0124	143315..143857 [+], 543	83717629	lipoprotein	TssJ
11	BTH_II0125	143770..145212 [+], 1443	83717986	hypothetical protein	TssK
12	BTH_II0126	145209..146510 [+], 1302	83716132	hypothetical protein	TssL
13	BTH_II0127	146525..150433 [+], 3909	83716562	lipoprotein	TssM
14	BTH_II0128	150603..151172 [+], 570	83717749	hypothetical protein
15	BTH_II0129	151273..153891 [+], 2619	83718246	Rhs element Vgr protein	TssI
16	BTH_II0130	153966..154235 [+], 270	83716387	Rhs family protein	PAAR
17	BTH_II0131	154248..157700 [+], 3453	83716726	Rhs1 protein
18	BTH_II0132	157593..158975 [-], 1383	83716926	hypothetical protein
19	BTH_II0133	158984..160117 [-], 1134	83717748	fimbrial protein subfamily protein
20	BTH_II0134	160068..161138 [-], 1071	83716195	ImpA-like N-terminal family protein	TssA
21	BTH_II0135	161157..162206 [-], 1050	83716825	hypothetical protein	TssG
22	BTH_II0136	162203..164083 [-], 1881	83718132	hypothetical protein	TssF
23	BTH_II0137	164085..164603 [-], 519	83718123	hypothetical protein	TssE
24	BTH_II0138	164590..165444 [-], 855	83716566	ImpE protein superfamily protein	TagJ
25	BTH_II0139	165428..166483 [-], 1056	83717118	hypothetical protein
26	BTH_II0140	166857..169613 [+], 2757	83717355	ClpA/B type protease	TssH
27	BTH_II0141	170006..172864 [-], 2859	83717305	two-component system sensor protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Russell AB et al. (2012). A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host Microbe. 11(5):538-49. [PudMed:22607806]

(2) Schwarz S et al. (2010). Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions. PLoS Pathog. 6(8):e1001068. [PudMed:20865170]

This literature contains experimental investigation

This literature contains bioinformatics investigation