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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BTH_RS00590 | 132907..133461 [+], 555 | 499720066 | type 1 fimbrial protein | |
2 | BTH_RS00595 | 133543..134268 [+], 726 | 499720067 | fimbria/pilus periplasmic chaperone | |
3 | BTH_RS34170 | 134317..134475 [-], 159 | 1807074601 | hypothetical protein | |
4 | BTH_RS00600 | 134428..137124 [+], 2697 | 497580537 | fimbrial biogenesis outer membrane usher protein | |
5 | BTH_RS00605 | 137117..137689 [+], 573 | 648185552 | type 1 fimbrial protein | |
6 | BTH_RS00610 | 137720..138409 [+], 690 | 497592905 | DotU family type IV/VI secretion system protein | TssL |
7 | BTH_RS00615 | 138412..140088 [+], 1677 | 497580543 | OmpA family protein | TagL |
8 | BTH_RS00620 (tssB) | 140432..140971 [+], 540 | 497580544 | type VI secretion system contractile sheath small subunit | TssB |
9 | BTH_RS00625 (tssC) | 141005..142504 [+], 1500 | 497580545 | type VI secretion system contractile sheath large subunit | TssC |
10 | BTH_RS00630 | 142705..143187 [+], 483 | 497580546 | type VI secretion system tube protein Hcp | TssD |
11 | BTH_RS00635 (tssJ) | 143315..143857 [+], 543 | 499720069 | type VI secretion system lipoprotein TssJ | TssJ |
12 | BTH_RS00640 (tssK) | 143863..145212 [+], 1350 | 497580548 | type VI secretion system baseplate subunit TssK | |
13 | BTH_RS00645 (tssL) | 145209..146510 [+], 1302 | 497580549 | type VI secretion system protein TssL, long form | TssL |
14 | BTH_RS00650 (tssM) | 146525..150433 [+], 3909 | 497580552 | type VI secretion system membrane subunit TssM | TssM |
15 | BTH_RS00655 | 150603..151172 [+], 570 | 497580554 | hypothetical protein | |
16 | BTH_RS00660 (tssI) | 151273..153891 [+], 2619 | 499720071 | type VI secretion system tip protein VgrG | TssI |
17 | BTH_RS00665 | 153966..154235 [+], 270 | 490658703 | PAAR domain-containing protein | PAAR |
18 | BTH_RS00670 | 154248..157700 [+], 3453 | 499720072 | RHS repeat protein | |
19 | BTH_RS00675 | 157593..158951 [-], 1359 | 740922510 | hypothetical protein | |
20 | BTH_RS00680 | 158984..160012 [-], 1029 | 497580566 | fimbrial protein | |
21 | BTH_RS00685 | 160068..161138 [-], 1071 | 497580567 | type VI secretion system ImpA family N-terminal domain-containing protein | TssA |
22 | BTH_RS00690 (tssG) | 161157..162206 [-], 1050 | 497580569 | type VI secretion system baseplate subunit TssG | TssG |
23 | BTH_RS00695 (tssF) | 162203..164083 [-], 1881 | 497580571 | type VI secretion system baseplate subunit TssF | TssF |
24 | BTH_RS00700 (tssE) | 164085..164603 [-], 519 | 497580573 | type VI secretion system baseplate subunit TssE | TssE |
25 | BTH_RS00705 | 164590..165396 [-], 807 | 497580574 | ImpE protein | |
26 | BTH_RS00710 | 165428..166411 [-], 984 | 1844068774 | TagK domain-containing protein | |
27 | BTH_RS00715 (tssH) | 166968..169613 [+], 2646 | 497592915 | type VI secretion system ATPase TssH | |
28 | BTH_RS00720 | 170006..173047 [-], 3042 | 644827693 | response regulator | |
29 | BTH_RS29330 | 173846..174040 [-], 195 | 497592916 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein