SecReT6
I. Summary
SecReT6 ID114 insolico
StrainBurkholderia thailandensis E264
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_007650
Location2282208..2308569
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BTH_RS096252277721..2278998 [-], 1278497582378glycosyltransferase 
2BTH_RS096302279278..2280177 [-], 900497582376alpha/beta hydrolase 
3BTH_RS096352280750..2281025 [-], 276497593796hypothetical protein 
4BTH_RS096402281342..2281767 [-], 426499720685hypothetical protein 
5BTH_RS096452281790..2282149 [-], 360497579572hypothetical protein 
6BTH_RS09650 (tssM)2282208..2285702 [-], 3495497579573type VI secretion system membrane subunit TssM 
7BTH_RS09655 (icmH)2285699..2287426 [-], 1728497579574type IVB secretion system protein IcmH/DotU 
8BTH_RS09660 (tssK)2287509..2288870 [-], 1362497579575type VI secretion system baseplate subunit TssK 
9BTH_RS096652288867..2289460 [-], 594497579576type VI secretion lipoprotein TssJ 
10BTH_RS096702289466..2289855 [-], 390497579577DUF4150 domain-containing protein 
11BTH_RS096752289895..2290611 [-], 717497579579DUF3540 domain-containing protein 
12BTH_RS096802290614..2291684 [-], 1071497579581pentapeptide repeat-containing protein 
13BTH_RS096852291684..2293900 [-], 2217497579582pentapeptide repeat-containing protein 
14BTH_RS09690 (vgrG)2293904..2296192 [-], 2289497579584type VI secretion system tip protein VgrG 
15BTH_RS09695 (vgrG)2296361..2298652 [-], 2292499720689type VI secretion system tip protein VgrG 
16BTH_RS09700 (tssH)2298643..2301486 [-], 2844497579587type VI secretion system ATPase TssH 
17BTH_RS09705 (tssG)2301489..2302478 [-], 990497579588type VI secretion system baseplate subunit TssG 
18BTH_RS09710 (tssF)2302475..2304337 [-], 1863497586827type VI secretion system baseplate subunit TssF 
19BTH_RS097152304351..2304782 [-], 432497586828GPW/gp25 family protein 
20BTH_RS097202304861..2305388 [-], 528497586829type VI secretion system tube protein Hcp 
21BTH_RS09725 (tssC)2305532..2307037 [-], 1506497586830type VI secretion system contractile sheath large subunit 
22BTH_RS09730 (tssB)2307040..2307591 [-], 552497586831type VI secretion system contractile sheath small subunit 
23BTH_RS097352307625..2308569 [-], 945497593800type VI secretion system ImpA family N-terminal domain-containing protein 
24BTH_RS097402310190..2311704 [-], 1515497579594acetyl-CoA hydrolase/transferase family protein 
25BTH_RS097452312067..2312762 [+], 696497579596CDP-alcohol phosphatidyltransferase family protein 
26BTH_RS097502312759..2313532 [+], 7744975795982OG-Fe(II) oxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

Download FASTA format files
Proteins        Genes
N/A
(1) Russell AB et al. (2012). A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host Microbe. 11(5):538-49. [PudMed:22607806] experimental in_silico
(2) Schwarz S et al. (2010). Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions. PLoS Pathog. 6(8):e1001068. [PudMed:20865170] experimental
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation