I. Summary
SecReT6 ID116 insolico
StrainXanthomonas oryzae pv. oryzae MAFF 311018
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XOO_28783250207..3250443 [+], 23784624535ISXoo3 transposase orfA 
2XOO_28793250467..3250964 [+], 49884624536ISXoo3 transposase orfB 
3XOO_28803250927..3251712 [-], 78684624537IS1113 transposase 
4XOO_28813251760..3252398 [+], 63984624538transposase 
5XOO_28823252720..3253499 [+], 78084624539VirG-like two component response regulator 
6XOO_28833253496..3254488 [+], 99384624540cytochrome C peroxidase 
7XOO_28843254485..3256944 [+], 246084624541two-component VirA-like sensor kinase 
8XOO_28853257058..3258038 [+], 98184624542transcriptional regulator 
9XOO_28863258047..3259075 [+], 102984624543hypothetical protein  TssA
10XOO_28873259248..3259574 [-], 32784624544hypothetical protein 
11XOO_28883259571..3262474 [-], 290484624545hypothetical protein 
12XOO_28893262471..3263193 [-], 72384624546phosphoprotein phosphatase 
13XOO_28903263190..3263837 [-], 64884624547hypothetical protein 
14XOO_28913263834..3267292 [-], 345984624548hypothetical protein  TssM
15XOO_28923267296..3268612 [-], 131784624549hypothetical protein  TssL
16XOO_28933268614..3269951 [-], 133884624550hypothetical protein  TssK
17XOO_28943269948..3271339 [-], 139284624551hypothetical protein  Fha
18XOO_28953271336..3271875 [-], 54084624552hypothetical protein 
19XOO_28963271884..3273932 [-], 204984624553hypothetical protein  TssI
20XOO_28973274086..3274544 [-], 45984624554hypothetical protein 
21XOO_28983274619..3274870 [-], 25284624555ISXoo6 transposase 
22XOO_28993276177..3278882 [-], 270684624556chaperone ClpB  TssH
23XOO_29003278915..3279925 [-], 101184624557hypothetical protein  TssG
24XOO_29013279889..3281766 [-], 187884624558hypothetical protein  TssF
25XOO_29023281770..3282273 [-], 50484624559hypothetical protein  TssE
26XOO_29033282261..3283094 [-], 83484624560hypothetical protein  TagJ
27XOO_29043283130..3283633 [-], 50484624561hypothetical protein  TssD
28XOO_29053283733..3285304 [-], 157284624562hypothetical protein  TssC
29XOO_29063285240..3285875 [-], 63684624563hypothetical protein  TssB
30XOO_29073286268..3286909 [-], 64284624564hypothetical protein 
31XOO_29083287105..3288073 [-], 96984624565ISXo1 transposase 
32XOO_29093288209..3288595 [+], 38784624566ISXo8 transposase 
33XOO_29103288576..3289169 [+], 59484624567ISXo8 transposase 
34XOO_29113289340..3290575 [+], 123684624568ISXoo13 transposase 
35XOO_29123290761..3291729 [-], 96984624569ISXo1 transposase 
36XOO_29133291781..3293697 [-], 191784624570hypothetical protein 
37XOO_29143293722..3294459 [-], 73884624571hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation