I. Summary

SecReT6 ID	118
Strain	Jannaschia sp. CCS1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_007802
Location	3033323..3067638
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Jann_3008	3028342..3028701 [-], 360	89055499	hypothetical protein
2	Jann_3009	3028901..3029140 [+], 240	89055500	AbrB family transcriptional regulator
3	Jann_3010	3029137..3029532 [+], 396	89055501	twitching motility protein PilT
4	Jann_3011	3029685..3030146 [-], 462	89055502	hypothetical protein
5	Jann_3012	3031360..3032349 [-], 990	89055503	hypothetical protein
6	Jann_3013	3032562..3033326 [-], 765	89055504	hypothetical protein
7	Jann_3014	3033323..3034330 [-], 1008	89055505	hypothetical protein
8	Jann_3015	3034350..3035471 [-], 1122	89055506	hypothetical protein
9	Jann_3016	3035468..3036430 [-], 963	89055507	hypothetical protein
10	Jann_3017	3036445..3036804 [-], 360	89055508	hypothetical protein
11	Jann_3018	3037038..3037970 [-], 933	89055509	hypothetical protein
12	Jann_3019	3037974..3038411 [-], 438	89055510	hypothetical protein
13	Jann_3020	3038411..3040627 [-], 2217	89055511	Rhs element Vgr protein	TssI
14	Jann_3021	3040674..3041729 [-], 1056	89055512	hypothetical protein
15	Jann_3022	3041821..3042297 [-], 477	89055513	hypothetical protein	TssD
16	Jann_3023	3042365..3044959 [-], 2595	89055514	ATPase	TssH
17	Jann_3024	3045161..3046240 [+], 1080	89055515	hypothetical protein	TssA
18	Jann_3025	3046392..3046895 [+], 504	89055516	hypothetical protein	TssB
19	Jann_3026	3046898..3048382 [+], 1485	89055517	hypothetical protein	TssC
20	Jann_3027	3048384..3049781 [+], 1398	89055518	hypothetical protein	TssC
21	Jann_3028	3049778..3050575 [+], 798	89055519	virulence protein, SciE type	TagJ
22	Jann_3029	3050568..3051110 [+], 543	89055520	hypothetical protein	TssE
23	Jann_3030	3051107..3052885 [+], 1779	89055521	hypothetical protein	TssF
24	Jann_3031	3052882..3053868 [+], 987	89055522	hypothetical protein	TssG
25	Jann_3032	3053865..3055115 [+], 1251	89055523	FHA domain-containing protein	Fha
26	Jann_3033	3055112..3056443 [+], 1332	89055524	hypothetical protein	TssK
27	Jann_3034	3056440..3057903 [+], 1464	89055525	OmpA/MotB protein	TssL
28	Jann_3035	3057900..3061373 [+], 3474	89055526	hypothetical protein	TssM
29	Jann_3036	3061370..3062806 [+], 1437	89055527	hypothetical protein
30	Jann_3037	3062843..3063940 [+], 1098	89055528	polysaccharide export protein
31	Jann_3038	3064221..3064841 [+], 621	89055529	response regulator receiver/ANTAR domain-containing protein
32	Jann_3039	3064838..3066007 [+], 1170	89055530	putative nitrate transport protein
33	Jann_3040	3066280..3067638 [+], 1359	89055531	putative nitrate transport protein
34	Jann_3041	3067820..3068890 [+], 1071	89055532	binding-protein-dependent transport system inner membrane protein
35	Jann_3042	3068903..3070576 [+], 1674	89055533	nitrate transport ATP-binding subunits C and D

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

Atu4345

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	Jann_3022	3041821..3042297 [-], 477	89055513	hypothetical protein	Atu4345

Download FASTA format files

Proteins        Genes

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation