I. Summary
SecReT6 ID118 insolico
StrainJannaschia sp. CCS1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Jann_30083028342..3028701 [-], 36089055499hypothetical protein 
2Jann_30093028901..3029140 [+], 24089055500AbrB family transcriptional regulator 
3Jann_30103029137..3029532 [+], 39689055501twitching motility protein PilT 
4Jann_30113029685..3030146 [-], 46289055502hypothetical protein 
5Jann_30123031360..3032349 [-], 99089055503hypothetical protein 
6Jann_30133032562..3033326 [-], 76589055504hypothetical protein 
7Jann_30143033323..3034330 [-], 100889055505hypothetical protein 
8Jann_30153034350..3035471 [-], 112289055506hypothetical protein 
9Jann_30163035468..3036430 [-], 96389055507hypothetical protein 
10Jann_30173036445..3036804 [-], 36089055508hypothetical protein 
11Jann_30183037038..3037970 [-], 93389055509hypothetical protein 
12Jann_30193037974..3038411 [-], 43889055510hypothetical protein 
13Jann_30203038411..3040627 [-], 221789055511Rhs element Vgr protein  TssI
14Jann_30213040674..3041729 [-], 105689055512hypothetical protein 
15Jann_30223041821..3042297 [-], 47789055513hypothetical protein  TssD
16Jann_30233042365..3044959 [-], 259589055514ATPase  TssH
17Jann_30243045161..3046240 [+], 108089055515hypothetical protein  TssA
18Jann_30253046392..3046895 [+], 50489055516hypothetical protein  TssB
19Jann_30263046898..3048382 [+], 148589055517hypothetical protein  TssC
20Jann_30273048384..3049781 [+], 139889055518hypothetical protein  TssC
21Jann_30283049778..3050575 [+], 79889055519virulence protein, SciE type  TagJ
22Jann_30293050568..3051110 [+], 54389055520hypothetical protein  TssE
23Jann_30303051107..3052885 [+], 177989055521hypothetical protein  TssF
24Jann_30313052882..3053868 [+], 98789055522hypothetical protein  TssG
25Jann_30323053865..3055115 [+], 125189055523FHA domain-containing protein  Fha
26Jann_30333055112..3056443 [+], 133289055524hypothetical protein  TssK
27Jann_30343056440..3057903 [+], 146489055525OmpA/MotB protein  TssL
28Jann_30353057900..3061373 [+], 347489055526hypothetical protein  TssM
29Jann_30363061370..3062806 [+], 143789055527hypothetical protein 
30Jann_30373062843..3063940 [+], 109889055528polysaccharide export protein 
31Jann_30383064221..3064841 [+], 62189055529response regulator receiver/ANTAR domain-containing protein 
32Jann_30393064838..3066007 [+], 117089055530putative nitrate transport protein 
33Jann_30403066280..3067638 [+], 135989055531putative nitrate transport protein 
34Jann_30413067820..3068890 [+], 107189055532binding-protein-dependent transport system inner membrane protein 
35Jann_30423068903..3070576 [+], 167489055533nitrate transport ATP-binding subunits C and D 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Jann_30223041821..3042297 [-], 47789055513hypothetical protein Atu4345

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Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation