I. Summary
SecReT6 ID119 insolico
StrainSaccharophagus degradans 2-40
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Sde_15111949917..1952301 [+], 238590021158DNA polymerase II 
2Sde_15121952372..1952992 [-], 62190021159hypothetical protein 
3Sde_15131953057..1953422 [-], 36690021160hypothetical protein 
4Sde_15141953613..1954308 [+], 69690021161carboxylesterase 
5Sde_15151954421..1955377 [-], 95790021162hypothetical protein 
6Sde_15161955429..1956334 [-], 90690021163response regulator receiver domain-containing protein 
7Sde_15171956365..1957363 [-], 999900211643-oxoacyl-ACP synthase 
8Sde_15181958049..1958891 [+], 84390021165hypothetical protein 
9Sde_15191958894..1959325 [+], 43290021166hypothetical protein 
10Sde_15201959354..1960079 [-], 72690021167putative phosphoprotein phosphatase 
11Sde_15211960096..1960872 [-], 77790021168GTP-binding protein 
12Sde_15221960893..1964438 [-], 354690021169hypothetical protein  TssM
13Sde_15231964450..1965859 [-], 141090021170hypothetical protein  TssL
14Sde_15241965894..1967231 [-], 133890021171hypothetical protein  TssK
15Sde_15251967303..1967797 [-], 49590021172hypothetical protein  TssJ
16Sde_15261967820..1969016 [-], 119790021173FHA domain-containing protein  Fha
17Sde_15271969782..1971800 [+], 201990021174Serine/threonine protein kinase-like protein 
18Sde_15281971811..1972926 [+], 111690021175hypothetical protein  TssA
19Sde_15291973009..1973512 [+], 50490021176hypothetical protein  TssB
20Sde_15301973515..1974990 [+], 147690021177hypothetical protein  TssC
21Sde_15311975157..1976710 [+], 155490021178hypothetical protein  TssC
22Sde_15321976725..1977558 [+], 83490021179hypothetical protein  TagJ
23Sde_15331977562..1978059 [+], 49890021180hypothetical protein  TssE
24Sde_15341978052..1979887 [+], 183690021181hypothetical protein  TssF
25Sde_15351979911..1980900 [+], 99090021182hypothetical protein  TssG
26Sde_15361980897..1983590 [+], 269490021183fibronectin, type III  TssH
27Sde_15371983718..1984206 [+], 48990021184histidine kinase  TssD
28Sde_15381984325..1986190 [+], 186690021185two component LuxR family transcriptional regulator  TssI
29Sde_15391986300..1986809 [+], 51090021186hypothetical protein 
30Sde_15401986830..1987195 [-], 36690021187ATP-dependent helicase HrpB 
31Sde_15411987316..1987741 [+], 42690021188hypothetical protein 
32Sde_15421987808..1989745 [+], 193890021189DNA topoisomerase III 
33Sde_15431989943..1990329 [+], 38790021190hypothetical protein 
34Sde_15441990462..1991199 [+], 73890021191threonyl-tRNA synthetase, class IIA 
35Sde_15451991234..1991773 [+], 54090021192initiation factor 3 
36Sde_15461991873..1992775 [-], 9039002119350S ribosomal protein L35 
37Sde_15471992986..1993390 [+], 4059002119450S ribosomal protein L20 
38Sde_15481993467..1994291 [+], 82590021195phenylalanyl-tRNA synthetase subunit alpha 
39Sde_15491994406..1995299 [+], 89490021196phenylalanyl-tRNA synthetase subunit beta 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation