I. Summary
SecReT6 ID12 insolico
StrainGeobacter sulfurreducens PCA
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1GSU31533459731..3460738 [-], 100839998243iron-sulfur cluster-binding protein 
2GSU31543460814..3462286 [-], 147339998244cytochrome C nitrite reductase, catalytic subunit NrfA 
3GSU31553462332..3462736 [-], 40539998245cytochrome C nitrite reductase small subunit NrfH 
4GSU31563463071..3464168 [+], 109839998246methyl-accepting chemotaxis protein 
5GSU31573464329..3465129 [+], 80139998247alpha/beta fold family hydrolase 
6GSU3158 (cysM)3465190..3466116 [-], 92739998248cysteine synthase B 
7GSU31593466266..3466820 [+], 55539998249mutT/nudix family protein 
8GSU31603466826..3467578 [+], 75339998250RNA pseudouridine synthase 
9GSU3161 (msrA)3467663..3468151 [+], 48939998251methionine sulfoxide reductase A 
10GSU31623468247..3469293 [+], 104739998252L-allo-threonine aldolase 
11GSU31633469290..3469436 [+], 14739998253hypothetical protein 
12GSU31643469452..3469658 [+], 20739998254hypothetical protein 
13GSU31653469894..3470688 [+], 79539998255hypothetical protein  TssL
14GSU31663470702..3474154 [+], 345339998256hypothetical protein  TssM
15GSU31673474201..3476570 [+], 237039998257hypothetical protein  TssA
16GSU31683476577..3477770 [+], 1194399982583-oxoacyl-ACP synthase 
17GSU31693477770..3478438 [+], 66939998259hypothetical protein  PAAR
18GSU31703478435..3479463 [+], 102939998260hypothetical protein 
19GSU31713479479..3481098 [+], 162039998261hypothetical protein 
20GSU31723481200..3481685 [+], 48639998262hypothetical protein  TssB
21GSU31733481696..3483180 [+], 148539998263hypothetical protein  TssC
22GSU3174 (hcP-2)3483262..3483747 [+], 48639998264hcp protein  TssD
23GSU31753483866..3484321 [+], 45639998265hypothetical protein 
24GSU31763484376..3485293 [+], 91839998266lysM domain-containing protein 
25GSU31773485350..3487443 [+], 209439998267Rhs family protein  TssI
26GSU31783487475..3487750 [+], 27639998268hypothetical protein 
27GSU31793487734..3487979 [+], 24639998269hypothetical protein 
28GSU31803488000..3489253 [+], 125439998270hypothetical protein 
29GSU31813489250..3490293 [+], 1044399982713-oxoacyl-ACP synthase 
30GSU31823490313..3490693 [+], 38139998272hypothetical protein  PAAR
31GSU31833490745..3491122 [+], 37839998273hypothetical protein 
32GSU31843491320..3493002 [+], 168339998274hypothetical protein 
33GSU31853492999..3494222 [+], 122439998275hypothetical protein 
34GSU31863494464..3495471 [+], 100839998276hypothetical protein 
35GSU31873495602..3495793 [+], 19239998277ferredoxin family protein 
36GSU31883495860..3496018 [+], 15939998278rubredoxin 
37GSU31893496070..3496438 [-], 36939998279hypothetical protein 
38GSU31903496433..3496669 [+], 23739998280twin arginine-targeting protein translocase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation