I. Summary
SecReT6 ID122 insolico
StrainBurkholderia xenovorans LB400
Repliconchromosome I [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bxe_A2108 (catB)2600273..2601430 [-], 115891783706muconate cycloisomerase 
2Bxe_A2107 (catR)2601535..2602422 [+], 88891783707LysR family transcriptional regulator 
3Bxe_A21062602446..2603399 [-], 95491783708LysR family transcriptional regulator 
4Bxe_A21052603471..2604754 [+], 128491783709(poly)aromatic ring hydroxylating dioxygenase, alpha subunit (Rieske (2Fe-2S) region) 
5Bxe_A21042604751..2605251 [+], 50191783710aromatic-ring-hydroxylating dioxygenase, beta subunit 
6Bxe_A21032605278..2606594 [+], 131791783711major facilitator superfamily metabolite/H(+) symporter 
7Bxe_A21022606806..2607183 [+], 37891783712hypothetical protein 
8Bxe_A21012607167..2607709 [+], 54391783713hypothetical protein 
9Bxe_A21002607706..2608830 [+], 112591783714Asp-tRNA Asn/Glu-tRNAGln amidotransferase A subunit 
10Bxe_A20992608888..2609631 [+], 74491783715short-chain dehydrogenase/reductase, TsaC-like 
11Bxe_A20982609791..2610888 [-], 109891783716cytoplasmic protein  TssA
12Bxe_A20972611074..2611778 [-], 70591783717hypothetical protein 
13Bxe_A20962612313..2615063 [+], 275191783718ClpA/B-type chaperone, ATPase subunit ClpB, heat shock protein  TssH
14Bxe_A20952615103..2615651 [+], 54991783719cytoplasmic protein  TssB
15Bxe_A20942615685..2617178 [+], 149491783720cytoplasmic protein  TssC
16Bxe_A20932617345..2617746 [+], 40291783721hypothetical protein 
17Bxe_A20922617743..2618234 [+], 49291783722hypothetical protein 
18Bxe_A20912618277..2618759 [+], 48391783723cytoplasmic protein  TssD
19Bxe_A20902618874..2619374 [+], 50191783724outer membrane lipoprotein  TssJ
20Bxe_A20892619387..2620733 [+], 134791783725temperature-dependent protein secretion, ImpJ  TssK
21Bxe_A20882620821..2622152 [+], 133291783726hypothetical protein  TssL
22Bxe_A20872622274..2623164 [-], 89191783727IS3 family transposase orfB 
23Bxe_A20862623161..2623448 [-], 28891783728transposase 
24Bxe_A20852623466..2627563 [+], 409891783729membrane protein, SciS/IcmF-like  TssM
25Bxe_A20842627759..2628160 [-], 40291783730cation resistance protein, CopC-like 
26Bxe_A20832628177..2629073 [-], 89791783731hypothetical protein 
27Bxe_A20822629182..2629652 [-], 47191783732hypothetical protein 
28Bxe_A20812629888..2631240 [+], 135391783733TRAP-type uncharacterized transport system, periplasmic component protein 
29Bxe_A20802631257..2632111 [-], 85591783734ProQ activator of osmoprotectant transporter ProP 
30Bxe_A20792632268..2633179 [+], 91291783735LysR family transcriptional regulator 
31Bxe_A20782633216..2634592 [-], 137791783736major facilitator superfamily metabolite/H(+) symporter 
32Bxe_A20772634716..2635534 [-], 81991783737enoyl-CoA hydratase/isomerase 
33Bxe_A20762635539..2637116 [-], 157891783738long-chain-fatty acid CoA ligase 
34Bxe_A20752637109..2637639 [-], 53191783739oxidoreductase, iron-sulfur subunit 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation