I. Summary

SecReT6 ID	123
Strain	Chromohalobacter salexigens DSM 3043
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_007963
Location	2526600..2567218
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	2

15

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Csal_2249	2524439..2525323 [-], 885	92114371	hypothetical protein
2	Csal_2251	2526600..2527553 [-], 954	92114372	hypothetical protein
3	Csal_2252	2527564..2530191 [-], 2628	92114373	hypothetical protein
4	Csal_2253	2530188..2531084 [-], 897	92114374	hypothetical protein
5	Csal_2254	2531081..2533708 [-], 2628	92114375	Rhs element Vgr protein	TssI
6	Csal_2255	2533831..2534100 [+], 270	92114376	hypothetical protein	PAAR
7	Csal_2256	2534091..2535245 [-], 1155	92114377	hypothetical protein
8	Csal_2257	2535248..2536363 [-], 1116	92114378	ImpA-like protein	TssA
9	Csal_2258	2536669..2537199 [-], 531	92114379	hypothetical protein	TssD
10	Csal_2259	2537272..2537520 [+], 249	92114380	hypothetical protein
11	Csal_2260	2537550..2540042 [-], 2493	92114381	OmpA/MotB protein	TssM
12	Csal_2261	2540070..2540987 [-], 918	92114382	hypothetical protein
13	Csal_2262	2541021..2545028 [-], 4008	92114383	ImcF-like protein	TssM
14	Csal_2263	2545043..2545756 [-], 714	92114384	hypothetical protein	TssL
15	Csal_2264	2545753..2547099 [-], 1347	92114385	hypothetical protein	TssK
16	Csal_2265	2547192..2547737 [-], 546	92114386	putative lipoprotein	TssJ
17	Csal_2266	2547783..2548430 [+], 648	92114387	hypothetical protein
18	Csal_2267	2548679..2549434 [+], 756	92114388	hypothetical protein
19	Csal_2268	2549491..2550024 [+], 534	92114389	hypothetical protein	TssB
20	Csal_2269	2550036..2551535 [+], 1500	92114390	hypothetical protein	TssC
21	Csal_2270	2551658..2552140 [+], 483	92114391	hypothetical protein	TssE
22	Csal_2271	2552140..2553975 [+], 1836	92114392	hypothetical protein	TssF
23	Csal_2272	2554023..2555015 [+], 993	92114393	hypothetical protein	TssG
24	Csal_2273	2555012..2557681 [+], 2670	92114394	ATPase AAA-2	TssH
25	Csal_2274	2557718..2560333 [+], 2616	92114395	Rhs element Vgr protein	TssI
26	Csal_2275	2560337..2561224 [+], 888	92114396	hypothetical protein
27	Csal_2276	2561246..2563888 [+], 2643	92114397	hypothetical protein
28	Csal_2277	2563890..2564963 [+], 1074	92114398	hypothetical protein
29	Csal_2278	2565323..2567218 [+], 1896	92114399	hypothetical protein
30	Csal_2279	2567220..2568296 [+], 1077	92114400	hypothetical protein
31	Csal_2280	2568521..2570167 [-], 1647	92114401	serine/threonine protein kinase
32	Csal_2281	2570427..2570957 [+], 531	92114402	inorganic diphosphatase
33	Csal_2282	2571077..2572162 [-], 1086	92114403	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation