 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Rmet_0611 | 665546..666292 [+], 747 | 94309556 | TetR/AcrR family transcriptional regulator | |
2 | Rmet_0612 | 666464..667159 [+], 696 | 94309557 | LuxR family two component transcriptional regulator | |
3 | Rmet_0613 | 667171..669108 [+], 1938 | 94309558 | putative two-component sensor histidine kinase | |
4 | Rmet_0614 | 668983..674208 [-], 5226 | 94309559 | hypothetical protein | |
5 | Rmet_0615 (groS) | 674569..674859 [+], 291 | 94309560 | co-chaperonin GroES | |
6 | Rmet_0616 (groL) | 674944..676587 [+], 1644 | 94309561 | chaperonin GroEL | |
7 | Rmet_0617 | 676887..677321 [-], 435 | 94309562 | hypothetical protein | TssE |
8 | Rmet_0618 (clpB) | 677318..679999 [-], 2682 | 94309563 | Chaperone ClpB | TssH |
9 | Rmet_0619 | 680084..680569 [-], 486 | 94309564 | hypothetical protein | TssD |
10 | Rmet_0620 | 680584..682302 [-], 1719 | 94309565 | putative OmpA/MotB | TagL |
11 | Rmet_0621 | 682313..682969 [-], 657 | 94309566 | hypothetical protein | TssL |
12 | Rmet_0622 | 682966..683796 [-], 831 | 94309567 | hypothetical protein | TssK |
13 | Rmet_0623 | 683645..684205 [-], 561 | 335055499 | hypothetical protein | TssK |
14 | Rmet_0624 | 684362..685939 [-], 1578 | 94309569 | hypothetical protein | TssC |
15 | Rmet_0625 | 685965..686480 [-], 516 | 94309570 | hypothetical protein | TssB |
16 | Rmet_0626 | 686770..689439 [+], 2670 | 94309571 | Rhs element Vgr protein | TssI |
17 | Rmet_0627 | 689436..691403 [+], 1968 | 94309572 | putative phospholipase D family protein | |
18 | Rmet_0628 | 691407..692714 [+], 1308 | 94309573 | putative sel1-like repeat; harboring protein | |
19 | Rmet_0629 | 692711..692911 [+], 201 | 94309574 | putative phospholipase protein | |
20 | Rmet_0630 | 692915..694213 [+], 1299 | 94309575 | putative sel1-like repeat; harboring protein | |
21 | Rmet_0631 | 694310..694564 [+], 255 | 94309576 | hypothetical protein | PAAR |
22 | Rmet_0632 | 694531..695808 [+], 1278 | 94309577 | hypothetical protein | |
23 | Rmet_0633 | 695874..699221 [+], 3348 | 94309578 | hypothetical protein | TssM |
24 | Rmet_0634 | 699369..700940 [+], 1572 | 94309579 | ImpA, N-terminal | TssA |
25 | Rmet_0635 | 700962..702782 [+], 1821 | 94309580 | hypothetical protein | TssF |
26 | Rmet_0636 | 702800..703888 [+], 1089 | 94309581 | hypothetical protein | TssG |
27 | Rmet_0637 | 703925..704494 [+], 570 | 94309582 | hypothetical protein | TssJ |
28 | Rmet_0638 | 704628..705416 [-], 789 | 94309583 | Metallophosphoesterase | |
29 | Rmet_0639 (tadC) | 705624..706595 [-], 972 | 94309584 | type II secretion system protein | |
30 | Rmet_0640 (tadB) | 706647..707624 [-], 978 | 94309585 | flp pilus assembly protein TadB | |
31 | Rmet_0641 (cpaF1) | 707667..709037 [-], 1371 | 94309586 | flp pilus assembly ATPase CpaF | |
32 | Rmet_0642 (cpaE1) | 709100..710293 [-], 1194 | 94309587 | flp pilus assembly ATPase | |
33 | Rmet_0643 | 710354..710812 [-], 459 | 94309588 | flp pilus assembly protein | |
34 | Rmet_0644 | 710809..711339 [-], 531 | 94309589 | flp pilus assembly protein | |
35 | Rmet_0645 | 711349..712653 [-], 1305 | 94309590 | hypothetical protein | |
36 | Rmet_0646 | 712676..713023 [-], 348 | 94309591 | hypothetical protein | |
37 | Rmet_0647 (cpaC1) | 713059..714921 [-], 1863 | 94309592 | Flp pilus assembly protein secretin CpaC | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein