SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	124
Strain	Cupriavidus metallidurans CH34
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_007973
Location	668983..710293
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	2	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Rmet_0611	665546..666292 [+], 747	94309556	TetR/AcrR family transcriptional regulator
2	Rmet_0612	666464..667159 [+], 696	94309557	LuxR family two component transcriptional regulator
3	Rmet_0613	667171..669108 [+], 1938	94309558	putative two-component sensor histidine kinase
4	Rmet_0614	668983..674208 [-], 5226	94309559	hypothetical protein
5	Rmet_0615 (groS)	674569..674859 [+], 291	94309560	co-chaperonin GroES
6	Rmet_0616 (groL)	674944..676587 [+], 1644	94309561	chaperonin GroEL
7	Rmet_0617	676887..677321 [-], 435	94309562	hypothetical protein	TssE
8	Rmet_0618 (clpB)	677318..679999 [-], 2682	94309563	Chaperone ClpB	TssH
9	Rmet_0619	680084..680569 [-], 486	94309564	hypothetical protein	TssD
10	Rmet_0620	680584..682302 [-], 1719	94309565	putative OmpA/MotB	TagL
11	Rmet_0621	682313..682969 [-], 657	94309566	hypothetical protein	TssL
12	Rmet_0622	682966..683796 [-], 831	94309567	hypothetical protein	TssK
13	Rmet_0623	683645..684205 [-], 561	335055499	hypothetical protein	TssK
14	Rmet_0624	684362..685939 [-], 1578	94309569	hypothetical protein	TssC
15	Rmet_0625	685965..686480 [-], 516	94309570	hypothetical protein	TssB
16	Rmet_0626	686770..689439 [+], 2670	94309571	Rhs element Vgr protein	TssI
17	Rmet_0627	689436..691403 [+], 1968	94309572	putative phospholipase D family protein
18	Rmet_0628	691407..692714 [+], 1308	94309573	putative sel1-like repeat; harboring protein
19	Rmet_0629	692711..692911 [+], 201	94309574	putative phospholipase protein
20	Rmet_0630	692915..694213 [+], 1299	94309575	putative sel1-like repeat; harboring protein
21	Rmet_0631	694310..694564 [+], 255	94309576	hypothetical protein	PAAR
22	Rmet_0632	694531..695808 [+], 1278	94309577	hypothetical protein
23	Rmet_0633	695874..699221 [+], 3348	94309578	hypothetical protein	TssM
24	Rmet_0634	699369..700940 [+], 1572	94309579	ImpA, N-terminal	TssA
25	Rmet_0635	700962..702782 [+], 1821	94309580	hypothetical protein	TssF
26	Rmet_0636	702800..703888 [+], 1089	94309581	hypothetical protein	TssG
27	Rmet_0637	703925..704494 [+], 570	94309582	hypothetical protein	TssJ
28	Rmet_0638	704628..705416 [-], 789	94309583	Metallophosphoesterase
29	Rmet_0639 (tadC)	705624..706595 [-], 972	94309584	type II secretion system protein
30	Rmet_0640 (tadB)	706647..707624 [-], 978	94309585	flp pilus assembly protein TadB
31	Rmet_0641 (cpaF1)	707667..709037 [-], 1371	94309586	flp pilus assembly ATPase CpaF
32	Rmet_0642 (cpaE1)	709100..710293 [-], 1194	94309587	flp pilus assembly ATPase
33	Rmet_0643	710354..710812 [-], 459	94309588	flp pilus assembly protein
34	Rmet_0644	710809..711339 [-], 531	94309589	flp pilus assembly protein
35	Rmet_0645	711349..712653 [-], 1305	94309590	hypothetical protein
36	Rmet_0646	712676..713023 [-], 348	94309591	hypothetical protein
37	Rmet_0647 (cpaC1)	713059..714921 [-], 1863	94309592	Flp pilus assembly protein secretin CpaC

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	Rmet_0619	680084..680569 [-], 486	94309564	hypothetical protein	EC042_4529

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Proteins Genes

N/A