I. Summary
SecReT6 ID128 insolico
StrainYersinia pestis Nepal516
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPN_0025 (malG)40963..41853 [-], 891108810191maltose transporter permease 
2YPN_0026 (malF)41867..43444 [-], 1578108810192maltose transporter membrane protein 
3YPN_0027 (malE)43631..44842 [-], 1212108810193maltose ABC transporter periplasmic protein 
4YPN_002845430..45666 [+], 237108810194hypothetical protein 
5YPN_002945670..46779 [+], 1110108810195maltose/maltodextrin transporter ATP-binding protein 
6YPN_0030 (lamB)46850..48121 [+], 1272108810196maltoporin 
7YPN_003148362..49273 [+], 912108810197maltose regulon periplasmic protein 
8YPN_003249612..50022 [+], 411108810198hypothetical protein 
9YPN_003350174..50692 [-], 519108810199hypothetical protein  TssD
10YPN_003451216..51713 [+], 498108810200hypothetical protein  TssB
11YPN_003551781..53262 [+], 1482108810201hypothetical protein  TssC
12YPN_003653269..53709 [+], 441108810202hypothetical protein  TssE
13YPN_003753709..54935 [+], 1227108810203hypothetical protein  TssF
14YPN_003854825..55610 [-], 786108810204transposase for insertion sequence IS1661 
15YPN_003955664..56308 [-], 645108810205insertion element IS1661 DNA-binding protein 
16YPN_004056921..59557 [-], 2637108810206phosphoenolpyruvate carboxylase 
17YPN_004159931..61094 [-], 1164108810207acetylornithine deacetylase 
18YPN_0042 (argC)61345..62349 [+], 1005108810208N-acetyl-gamma-glutamyl-phosphate reductase 
19YPN_004362515..63291 [+], 777108810209acetylglutamate kinase 
20YPN_004463458..64831 [+], 1374108810210argininosuccinate lyase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPN_003350174..50692 [-], 519108810199hypothetical protein ECA2866

Download FASTA format files
Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation