I. Summary
SecReT6 ID129 insolico
StrainYersinia pestis Nepal516
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPN_0363440337..440801 [+], 465108810528hypothetical protein 
2YPN_0364 (apaH)440891..441760 [-], 870108810529diadenosine tetraphosphatase 
3YPN_0365 (apaG)441777..442154 [-], 378108810530ApaG protein 
4YPN_0366 (ksgA)442168..442986 [-], 819108810531dimethyladenosine transferase 
5YPN_0367 (pdxA)442979..443983 [-], 10051088105324-hydroxythreonine-4-phosphate dehydrogenase 
6YPN_0368443958..445262 [-], 1305108810533peptidyl-prolyl cis-trans isomerase SurA 
7YPN_0369445330..447708 [-], 2379108810534organic solvent tolerance protein 
8YPN_0370 (djlA)447857..448690 [+], 834108810535Dna-J like membrane chaperone protein 
9YPN_0371448988..449608 [-], 621108810536ribosomal large subunit pseudouridine synthase A 
10YPN_0372449652..449777 [+], 126108810537hypothetical protein 
11YPN_0373450831..451574 [-], 744108810538hypothetical protein 
12YPN_0374451919..452917 [+], 999108810539hypothetical protein  TssA
13YPN_0375452928..453488 [+], 561108810540hypothetical protein  TssB
14YPN_0376453488..454999 [+], 1512108810541hypothetical protein  TssC
15YPN_0377455162..455680 [+], 519108810542hypothetical protein  TssD
16YPN_0378455754..456197 [+], 444108810543hypothetical protein  TssE
17YPN_0379456230..458074 [+], 1845108810544hypothetical protein  TssF
18YPN_0380458067..459050 [+], 984108810545hypothetical protein  TssG
19YPN_0381459068..461656 [+], 2589108810546Clp ATPase  TssH
20YPN_0382461760..464108 [+], 2349108810547hypothetical protein  TssI
21YPN_0383464121..466340 [+], 2220108810548hypothetical protein 
22YPN_0384466366..467469 [+], 1104108810549hypothetical protein 
23YPN_0385467462..468079 [+], 618108810550hypothetical protein 
24YPN_0386468085..468450 [+], 366108810551hypothetical protein  PAAR
25YPN_0387468443..468934 [+], 492108810552putative lipoprotein  TssJ
26YPN_0388469054..470409 [+], 1356108810553hypothetical protein  TssK
27YPN_0389470406..472016 [+], 1611108810554hypothetical protein  TssL
28YPN_0390472025..475519 [+], 3495108810555membrane protein  TssM
29YPN_0391475541..475894 [+], 354108810556hypothetical protein 
30YPN_0392476150..479056 [-], 2907108810557ATP-dependent helicase HepA 
31YPN_0393479517..481886 [-], 2370108810558DNA polymerase II 
32YPN_0394482082..482849 [+], 768108810559DedA family membrane protein 
33YPN_0395 (thiQ)482918..483628 [-], 711108810560thiamine transporter ATP-binding subunit 
34YPN_0396 (thiP)483615..485234 [-], 1620108810561thiamine transporter membrane protein 
35YPN_0397 (tbpA)485198..486190 [-], 993162139449thiamine transporter substrate binding subunit 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
YPK_3563 , YPK_3558

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPN_0377455162..455680 [+], 519108810542hypothetical protein YPK_3563
2YPN_0382461760..464108 [+], 2349108810547hypothetical protein YPK_3558

Download FASTA format files
Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation