I. Summary
SecReT6 ID13 insolico
StrainPseudomonas putida KT2440
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PP_26062980323..2980643 [-], 32126989325NIPSNAP family containing protein 
2PP_26072980628..2982361 [-], 173426989326fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 
3PP_26082982366..2983175 [-], 81026989327shikimate dehydrogenase 
4PP_26092983332..2984102 [+], 77126989328IclR family transcriptional regulator 
5PP_26102984253..2984510 [-], 25826989329hypothetical protein  PAAR
6PP_26112984507..2985466 [-], 96026989330hypothetical protein 
7PP_26122985405..2988395 [-], 299126989331hypothetical protein 
8PP_26132988388..2989338 [-], 95126989332hypothetical protein 
9PP_2614 (vgrG-1)2989308..2991476 [-], 216926989333vgrG protein  TssI
10PP_2615 (hcp-1)2991551..2992066 [-], 51626989334hcp protein  TssD
11PP_26162992200..2993069 [-], 87026989335hypothetical protein  TssL
12PP_26172993071..2994408 [-], 133826989336hypothetical protein  TssK
13PP_26182994464..2995261 [-], 79826989337hypothetical protein  TssJ
14PP_26192995258..2995827 [-], 57026989338FHA domain-containing protein  Fha
15PP_26202995824..2996840 [-], 101726989339hypothetical protein  TssG
16PP_26212996804..2998570 [-], 176726989340hypothetical protein  TssF
17PP_26222998574..2998984 [-], 41126989341hypothetical protein  TssE
18PP_26232998981..3000471 [-], 149126989342hypothetical protein  TssC
19PP_26243000489..3000992 [-], 50426989343hypothetical protein  TssB
20PP_26253001274..3001969 [+], 69626989344hypothetical protein 
21PP_26263001957..3003420 [+], 146426989345hypothetical protein 
22PP_26273003417..3007037 [+], 362126989346hypothetical protein  TssM
23PP_26283007115..3009091 [-], 197726989347ABC transporter ATP-binding protein  TagT
24PP_26293009133..3009903 [+], 77126989348hypothetical protein 
25PP_26303009908..3010762 [+], 85526989349hypothetical protein 
26PP_26313010759..3010944 [+], 18626989350hypothetical protein 
27PP_26323010937..3012550 [+], 161426989351hypothetical protein 
28PP_26333012547..3012765 [+], 21926989352hypothetical protein 
29PP_26343012762..3013469 [+], 70826989353cellulose synthase 
30PP_2635 (bcsA)3013466..3016075 [+], 261026989354cellulose synthase catalytic subunit 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PP_2615(hcp-1)2991551..2992066 [-], 51626989334hcp protein ECA2866

Download FASTA format files
Proteins        Genes
(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] in_silico
(2) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation