 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPN_1423 | 1617901..1618920 [-], 1020 | 108811586 | iron(III)-binding periplasmic protein | |
2 | YPN_1424 | 1619249..1620343 [+], 1095 | 108811587 | murein hydrolase B | |
3 | YPN_1425 | 1621609..1622211 [+], 603 | 108811588 | LuxR family regulatory protein | |
4 | YPN_1426 | 1622569..1623051 [-], 483 | 108811589 | hypothetical protein | |
5 | YPN_1427 | 1623048..1624730 [-], 1683 | 108811590 | hypothetical protein | TagL |
6 | YPN_1428 | 1624731..1625483 [-], 753 | 108811591 | hypothetical protein | |
7 | YPN_1429 | 1625429..1626766 [-], 1338 | 108811592 | hypothetical protein | |
8 | YPN_1430 | 1626806..1627837 [-], 1032 | 108811593 | fimbrial protein | |
9 | YPN_1431 | 1627844..1629025 [-], 1182 | 108811594 | hypothetical protein | TssA |
10 | YPN_1432 | 1629124..1630149 [-], 1026 | 108811595 | hypothetical protein | TssG |
11 | YPN_1433 | 1630149..1632029 [-], 1881 | 108811596 | hypothetical protein | TssF |
12 | YPN_1434 | 1632812..1635487 [+], 2676 | 108811597 | Clp ATPase | TssH |
13 | YPN_1435 | 1635688..1636233 [+], 546 | 108811598 | frimbrial protein | |
14 | YPN_1436 | 1636390..1637151 [+], 762 | 108811599 | pili chaperone protein | |
15 | YPN_1437 | 1637279..1638829 [+], 1551 | 108811600 | hypothetical protein | |
16 | YPN_1438 | 1638851..1639291 [-], 441 | 108811601 | transposase | |
17 | YPN_1439 | 1639336..1640058 [-], 723 | 108811602 | transposase | |
18 | YPN_1440 | 1640083..1641273 [+], 1191 | 108811603 | outer membrane fimbrial usher porin | |
19 | YPN_1441 | 1641258..1641866 [+], 609 | 108811604 | fimbrial protein | |
20 | YPN_1442 | 1641971..1642495 [+], 525 | 108811605 | hypothetical protein | TssB |
21 | YPN_1443 | 1642519..1644021 [+], 1503 | 108811606 | hypothetical protein | TssC |
22 | YPN_1444 | 1644263..1644832 [+], 570 | 108811607 | hypothetical protein | TssD |
23 | YPN_1445 | 1645085..1645645 [+], 561 | 108811608 | hypothetical protein | TssJ |
24 | YPN_1446 | 1645649..1646998 [+], 1350 | 108811609 | hypothetical protein | TssK |
25 | YPN_1447 | 1646995..1647663 [+], 669 | 108811610 | hypothetical protein | TssL |
26 | YPN_1448 | 1647677..1648699 [+], 1023 | 108811611 | transposase for insertion sequence IS100 | |
27 | YPN_1449 | 1648699..1649478 [+], 780 | 108811612 | transposase/IS protein | |
28 | YPN_1450 | 1649606..1649758 [+], 153 | 108811613 | outer membrane protein C2, porin | |
29 | YPN_1451 | 1650023..1650829 [-], 807 | 108811614 | N-formylglutamate amidohydrolase | |
30 | YPN_1452 | 1650826..1652046 [-], 1221 | 108811615 | imidazolonepropionase | |
31 | YPN_1453 | 1652250..1653017 [-], 768 | 108811616 | GntR family transcriptional regulator | |
32 | YPN_1454 | 1653165..1654535 [+], 1371 | 108811617 | N-formimino-L-glutamate deiminase | |
33 | YPN_1455 | 1654535..1655107 [+], 573 | 108811618 | hypothetical protein | |
34 | YPN_1456 | 1655285..1656889 [-], 1605 | 108811619 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein