I. Summary
SecReT6 ID130 insolico
StrainYersinia pestis Nepal516
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPN_14231617901..1618920 [-], 1020108811586iron(III)-binding periplasmic protein 
2YPN_14241619249..1620343 [+], 1095108811587murein hydrolase B 
3YPN_14251621609..1622211 [+], 603108811588LuxR family regulatory protein 
4YPN_14261622569..1623051 [-], 483108811589hypothetical protein 
5YPN_14271623048..1624730 [-], 1683108811590hypothetical protein  TagL
6YPN_14281624731..1625483 [-], 753108811591hypothetical protein 
7YPN_14291625429..1626766 [-], 1338108811592hypothetical protein 
8YPN_14301626806..1627837 [-], 1032108811593fimbrial protein 
9YPN_14311627844..1629025 [-], 1182108811594hypothetical protein  TssA
10YPN_14321629124..1630149 [-], 1026108811595hypothetical protein  TssG
11YPN_14331630149..1632029 [-], 1881108811596hypothetical protein  TssF
12YPN_14341632812..1635487 [+], 2676108811597Clp ATPase  TssH
13YPN_14351635688..1636233 [+], 546108811598frimbrial protein 
14YPN_14361636390..1637151 [+], 762108811599pili chaperone protein 
15YPN_14371637279..1638829 [+], 1551108811600hypothetical protein 
16YPN_14381638851..1639291 [-], 441108811601transposase 
17YPN_14391639336..1640058 [-], 723108811602transposase 
18YPN_14401640083..1641273 [+], 1191108811603outer membrane fimbrial usher porin 
19YPN_14411641258..1641866 [+], 609108811604fimbrial protein 
20YPN_14421641971..1642495 [+], 525108811605hypothetical protein  TssB
21YPN_14431642519..1644021 [+], 1503108811606hypothetical protein  TssC
22YPN_14441644263..1644832 [+], 570108811607hypothetical protein  TssD
23YPN_14451645085..1645645 [+], 561108811608hypothetical protein  TssJ
24YPN_14461645649..1646998 [+], 1350108811609hypothetical protein  TssK
25YPN_14471646995..1647663 [+], 669108811610hypothetical protein  TssL
26YPN_14481647677..1648699 [+], 1023108811611transposase for insertion sequence IS100 
27YPN_14491648699..1649478 [+], 780108811612transposase/IS protein 
28YPN_14501649606..1649758 [+], 153108811613outer membrane protein C2, porin 
29YPN_14511650023..1650829 [-], 807108811614N-formylglutamate amidohydrolase 
30YPN_14521650826..1652046 [-], 1221108811615imidazolonepropionase 
31YPN_14531652250..1653017 [-], 768108811616GntR family transcriptional regulator 
32YPN_14541653165..1654535 [+], 1371108811617N-formimino-L-glutamate deiminase 
33YPN_14551654535..1655107 [+], 573108811618hypothetical protein 
34YPN_14561655285..1656889 [-], 1605108811619hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPN_14441644263..1644832 [+], 570108811607hypothetical protein ROD_27741

Download FASTA format files
Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation