I. Summary
SecReT6 ID131 insolico
StrainYersinia pestis Nepal516
Repliconchromosome [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPN_22092496218..2496712 [-], 495108812370cytochrome c-type biogenesis protein CcmE 
2YPN_22102496709..2497011 [-], 303108812371heme exporter protein D 
3YPN_22112497008..2497745 [-], 738108812372heme exporter protein C 
4YPN_22122497808..2498467 [-], 660108812373heme exporter protein B 
5YPN_22132498437..2499093 [-], 657108812374cytochrome c biogenesis protein CcmA 
6YPN_22142499538..2500005 [-], 468108812375hypothetical protein 
7YPN_22152500621..2501163 [+], 543108812376hypothetical protein 
8YPN_22162501108..2503207 [+], 2100108812377membrane protein 
9YPN_22172503583..2503924 [+], 342108812378hypothetical protein 
10YPN_22182503999..2504364 [-], 366108812379membrane protein 
11YPN_22192504371..2504850 [-], 480108812380hypothetical protein  TssE
12YPN_22202504979..2505785 [-], 807108812381hypothetical protein  TagJ
13YPN_22212505805..2506653 [-], 849108812382hypothetical protein 
14YPN_22222507012..2509615 [-], 2604108812383hypothetical protein  TssI
15YPN_22232509909..2513736 [-], 3828108812384membrane protein  TssM
16YPN_22242513745..2514581 [-], 837108812385OmpA family protein  TssL
17YPN_22252514597..2515376 [-], 780108812386transposase/IS protein 
18YPN_22262515376..2516398 [-], 1023108812387transposase for insertion sequence IS100 
19YPN_22272517077..2517301 [+], 225108812388hypothetical protein 
20YPN_22282517311..2517652 [-], 342108812389sugar ABC transporter ATPase components 
21YPN_22292517538..2518428 [-], 891108812390binding-protein-dependent transport system, ATP-binding component 
22YPN_22302518453..2519280 [-], 828108812391binding-protein-dependent transport system, inner membrane component 
23YPN_22312519273..2520133 [-], 861108812392binding-protein-dependent transport system, inner membrane component 
24YPN_22322520200..2521468 [-], 1269108812393exported solute-binding protein 
25YPN_22332521498..2522511 [-], 1014108812394oxidoreductase 
26YPN_22342522650..2522865 [+], 216108812395hypothetical protein 
27YPN_22352523173..2523970 [-], 798108812396GntR family transcriptional regulator 
28YPN_22362523987..2524148 [+], 162108812397hypothetical protein 
29YPN_22372524315..2524521 [-], 207108812398hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation