I. Summary
SecReT6 ID133 insolico
StrainYersinia pestis Nepal516
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPN_31623561733..3562101 [-], 369108813322insertion sequence protein 
2YPN_31633562155..3562430 [-], 276108813323insertion sequence protein 
3YPN_31643562526..3563293 [-], 768108813324hypothetical protein 
4YPN_31653563280..3565577 [-], 2298108813325kinase 
5YPN_31663565593..3566228 [-], 636108813326hypothetical protein 
6YPN_31673567149..3567424 [-], 276108813327insertion sequence protein 
7YPN_31683568381..3570534 [-], 2154108813328hypothetical protein 
8YPN_31693570618..3572966 [-], 2349108813329hypothetical protein  TssI
9YPN_31703572963..3575611 [-], 2649108813330Clp ATPase  TssH
10YPN_31713576029..3576520 [-], 492108813331hypothetical protein  TssD
11YPN_31723576600..3578261 [-], 1662108813332PAL/OmpA-family membrane protein  TagL
12YPN_31733578261..3578947 [-], 687108813333membrane protein  TssL
13YPN_31743578944..3580296 [-], 1353108813334hypothetical protein  TssK
14YPN_31753580308..3581846 [-], 1539108813335hypothetical protein  TssC
15YPN_31763581895..3582395 [-], 501108813336hypothetical protein  TssB
16YPN_31773583795..3584166 [-], 372108813337hypothetical protein 
17YPN_31783584340..3584603 [-], 264108813338insertion element protein 
18YPN_31793584671..3585000 [-], 330108813339putative lipoprotein 
19YPN_31803585279..3585374 [-], 96108813340hypothetical protein 
20YPN_31813585517..3586167 [-], 651108813341membrane protein 
21YPN_31823587337..3587987 [+], 651108813342N-acylhomoserine lactone synthase YspI 
22YPN_31833587968..3588711 [-], 744108813343quorum-sensing transcriptional regulator 
23YPN_31843589273..3590649 [+], 1377108813344hypothetical protein 
24YPN_31853591026..3591859 [+], 834108813345hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPN_31713576029..3576520 [-], 492108813331hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation