I. Summary
SecReT6 ID134 insolico
StrainYersinia pestis Nepal516
Repliconchromosome [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPN_35504051562..4052065 [+], 504108813710carbohydrate transport protein 
2YPN_35514052227..4053105 [-], 879108813711AraC family transcription regulator 
3YPN_35524053363..4054493 [+], 1131108813712oxidoreductase 
4YPN_35534054490..4055389 [+], 900108813713hypothetical protein 
5YPN_35544055736..4056530 [-], 795108813714hypothetical protein 
6YPN_35554056539..4061077 [-], 4539108813715membrane protein  PAAR
7YPN_35564061122..4061544 [-], 423108813716hypothetical protein 
8YPN_35574061547..4063745 [-], 2199108813717Rhs accessory genetic element  TssI
9YPN_35584063767..4063943 [-], 177108813718hypothetical protein 
10YPN_35594064106..4064513 [+], 408108813719transcriptional regulatory protein 
11YPN_35604064595..4064819 [+], 225108813720hypothetical protein 
12YPN_35614064895..4065086 [+], 192108813721hypothetical protein 
13YPN_35624065136..4065621 [-], 486108813722hypothetical protein 
14YPN_35634065623..4066993 [-], 1371108813723hypothetical protein 
15YPN_35644067021..4069885 [-], 2865108813724hypothetical protein  PAAR
16YPN_35654069878..4070336 [-], 459108813725hypothetical protein 
17YPN_35664070342..4072744 [-], 2403108813726Rhs accessory genetic element  TssI
18YPN_35674072766..4073389 [-], 624108813727hypothetical protein  TssA
19YPN_35684073296..4074078 [-], 783108813728hypothetical protein  TssA
20YPN_35694074203..4077736 [-], 3534108813729hypothetical protein  TssM
21YPN_35704077768..4079156 [-], 1389108813730hypothetical protein  TssA
22YPN_35714079162..4079848 [-], 687108813731hypothetical protein 
23YPN_35724079845..4080642 [-], 798108813732hypothetical protein 
24YPN_35734080639..4083242 [-], 2604108813733Clp ATPase  TssH
25YPN_35744083253..4084020 [-], 768108813734membrane protein  TssL
26YPN_35754084020..4085366 [-], 1347108813735hypothetical protein  TssK
27YPN_35764085369..4085914 [-], 546108813736lipoprotein  TssJ
28YPN_35774085914..4087230 [-], 1317108813737hypothetical protein  Fha
29YPN_35784087356..4088444 [-], 1089108813738hypothetical protein  TssG
30YPN_35794088408..4089151 [-], 744108813739hypothetical protein  TssF
31YPN_35804089070..4089717 [+], 648108813740insertion element IS1661 DNA-binding protein 
32YPN_35814089771..4090556 [+], 786108813741transposase for insertion sequence IS1661 
33YPN_35824090911..4091342 [-], 432108813742hypothetical protein 
34YPN_35834091345..4091809 [-], 465108813743membrane protein 
35YPN_35844092118..4092492 [-], 375108813744hypothetical protein 
36YPN_3585 (glpD)4092891..4094405 [+], 1515108813745glycerol-3-phosphate dehydrogenase 
37YPN_35864094568..4097015 [-], 2448108813746glycogen phosphorylase 
38YPN_3587 (glgA)4097184..4098614 [-], 1431108813747glycogen synthase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation